May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

HCAC - HCAF
UniProt: P0ABW0 - Q47140
Length: 278
Sequences: 245
Seq/Len: 0.91
I_Prob: 0.00

HCAC - 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit
Paralog alert: 0.55 [within 20: 0.08] - ratio of genomes with paralogs
Cluster includes: HCAC NIRD
HCAF - 3-phenylpropionate/cinnamic acid dioxygenase subunit beta
Paralog alert: 0.28 [within 20: 0.07] - ratio of genomes with paralogs
Cluster includes: HCAF
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2gbwBDF:AECContact Map
2b1xBDF:AECContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
26_I 104_I 1.40 0.00
95_G 142_R 1.33 0.00
10_A 12_R 1.23 0.00
24_P 134_V 1.18 0.00
6_A 6_S 1.16 0.00
47_A 86_A 1.11 0.00
22_T 142_R 1.09 0.00
37_A 156_I 1.09 0.00
100_D 74_L 1.06 0.00
75_K 99_I 1.06 0.00
58_A 97_H 1.05 0.00
86_T 135_G 1.04 0.00
56_D 170_V 1.04 0.00
24_P 99_I 1.03 0.00
59_T 91_P 1.03 0.00
14_E 147_D 1.02 0.00
97_I 37_D 1.01 0.00
43_S 69_D 1.00 0.00
35_F 34_A 0.99 0.00
4_I 34_A 0.98 0.00
47_A 80_R 0.97 0.00
69_F 167_N 0.96 0.00
28_L 172_F 0.96 0.00
49_M 38_E 0.95 0.00
43_S 64_T 0.95 0.00
100_D 127_E 0.95 0.00
19_R 151_L 0.94 0.00
91_H 114_A 0.93 0.00
12_V 10_H 0.93 0.00
102_P 166_H 0.93 0.00
11_D 8_E 0.92 0.00
68_S 171_L 0.92 0.00
87_T 99_I 0.92 0.00
97_I 79_A 0.92 0.00
97_I 108_D 0.91 0.00
57_D 117_V 0.91 0.00
97_I 13_I 0.90 0.00
1_M 78_I 0.90 0.00
83_D 99_I 0.89 0.00
53_Y 100_S 0.88 0.00
99_I 24_L 0.87 0.00
28_L 86_A 0.87 0.00
104_A 137_R 0.87 0.00
52_G 87_W 0.87 0.00
14_E 27_W 0.87 0.00
15_G 157_V 0.86 0.00
85_L 155_D 0.86 0.00
23_S 158_L 0.86 0.00
10_A 8_E 0.86 0.00
66_A 149_W 0.85 0.00
72_K 149_W 0.85 0.00
69_F 92_P 0.85 0.00
103_E 143_R 0.84 0.00
12_V 28_K 0.84 0.00
79_L 131_T 0.84 0.00
87_T 31_D 0.84 0.00
86_T 31_D 0.84 0.00
41_R 104_I 0.84 0.00
46_N 45_R 0.83 0.00
97_I 54_D 0.83 0.00
50_S 69_D 0.83 0.00
22_T 8_E 0.82 0.00
26_I 8_E 0.82 0.00
13_P 78_I 0.82 0.00
53_Y 125_Q 0.82 0.00
51_E 33_L 0.82 0.00
95_G 8_E 0.82 0.00
58_A 39_E 0.81 0.00
69_F 67_F 0.81 0.00
35_F 115_V 0.81 0.00
83_D 24_L 0.80 0.00
97_I 105_S 0.80 0.00
33_G 19_H 0.80 0.00
58_A 155_D 0.79 0.00
20_I 70_T 0.79 0.00
18_L 108_D 0.79 0.00
32_G 98_L 0.79 0.00
90_V 38_E 0.79 0.00
8_P 34_A 0.79 0.00
26_I 112_V 0.79 0.00
13_P 106_E 0.78 0.00
7_C 43_T 0.78 0.00
76_A 54_D 0.78 0.00
50_S 84_G 0.78 0.00
56_D 57_K 0.78 0.00
9_V 81_L 0.78 0.00
70_C 53_R 0.78 0.00
69_F 93_S 0.77 0.00
2_N 29_F 0.77 0.00
34_E 31_D 0.77 0.00
57_D 139_D 0.77 0.00
33_G 12_R 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0653 seconds.