May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

HCAC - YFAE
UniProt: P0ABW0 - P0ABW3
Length: 190
Sequences: 590
Seq/Len: 3.19
I_Prob: 0.16

HCAC - 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit
Paralog alert: 0.55 [within 20: 0.08] - ratio of genomes with paralogs
Cluster includes: HCAC NIRD
YFAE - Uncharacterized ferredoxin-like protein YfaE
Paralog alert: 0.79 [within 20: 0.06] - ratio of genomes with paralogs
Cluster includes: YFAE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
13_P 51_A 1.23 0.16
22_T 17_D 0.93 0.07
9_V 24_A 0.93 0.06
46_N 41_Y 0.92 0.06
16_E 51_A 0.89 0.06
38_I 24_A 0.88 0.05
10_A 54_V 0.84 0.05
80_P 49_L 0.83 0.04
75_K 25_A 0.82 0.04
16_E 84_M 0.81 0.04
10_A 50_V 0.79 0.04
68_S 26_L 0.79 0.04
60_V 4_V 0.79 0.04
31_V 34_E 0.78 0.04
96_D 61_L 0.76 0.03
97_I 22_L 0.76 0.03
87_T 12_Q 0.76 0.03
33_G 16_Q 0.74 0.03
73_T 51_A 0.74 0.03
7_C 63_F 0.73 0.03
41_R 80_I 0.72 0.03
61_E 34_E 0.72 0.03
77_L 11_T 0.70 0.03
87_T 76_A 0.69 0.03
51_E 31_V 0.69 0.03
91_H 82_I 0.69 0.03
14_E 28_S 0.69 0.03
51_E 22_L 0.69 0.03
52_G 5_T 0.69 0.03
67_A 73_C 0.68 0.02
80_P 75_R 0.68 0.02
51_E 65_Q 0.68 0.02
12_V 13_L 0.67 0.02
92_V 82_I 0.67 0.02
87_T 25_A 0.66 0.02
90_V 4_V 0.66 0.02
11_D 66_P 0.65 0.02
39_N 70_L 0.65 0.02
26_I 7_R 0.64 0.02
60_V 27_E 0.64 0.02
35_F 20_P 0.63 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1754 seconds.