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OPENSEQ.org

CYOC - HYCD
UniProt: P0ABJ3 - P16430
Length: 511
Sequences: 1174
Seq/Len: 2.62
I_Prob: 0.22

CYOC - Cytochrome o ubiquinol oxidase subunit 3
Paralog alert: 0.19 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: CYOC
HYCD - Formate hydrogenlyase subunit 4
Paralog alert: 0.25 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: HYCD HYFC NUOH
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
49_V 159_N 1.31 0.22
83_Y 46_I 1.28 0.20
65_E 230_V 1.26 0.20
97_Q 235_F 1.18 0.16
41_S 296_F 1.14 0.14
170_T 102_Y 1.07 0.11
49_V 147_V 1.06 0.11
166_R 66_L 1.05 0.10
169_L 47_I 1.04 0.10
114_G 97_L 1.02 0.09
106_W 106_I 1.00 0.09
166_R 169_L 1.00 0.09
90_M 46_I 1.00 0.09
159_V 266_V 1.00 0.09
172_T 151_V 0.99 0.09
56_G 15_A 0.99 0.09
81_I 271_I 0.98 0.08
162_V 159_N 0.98 0.08
62_D 127_A 0.97 0.08
196_T 29_A 0.95 0.07
154_L 180_C 0.94 0.07
181_S 134_G 0.93 0.07
118_Y 222_W 0.92 0.07
182_L 35_R 0.92 0.07
93_N 226_L 0.92 0.07
30_W 106_I 0.91 0.06
27_F 141_L 0.91 0.06
172_T 62_W 0.90 0.06
197_V 281_L 0.90 0.06
108_F 189_E 0.90 0.06
158_A 69_Y 0.90 0.06
23_G 77_T 0.89 0.06
93_N 73_G 0.88 0.06
114_G 169_L 0.88 0.06
83_Y 265_V 0.88 0.06
48_A 29_A 0.88 0.06
113_I 238_V 0.86 0.05
104_L 62_W 0.86 0.05
61_K 50_L 0.86 0.05
26_I 216_G 0.86 0.05
50_L 235_F 0.86 0.05
63_I 214_G 0.86 0.05
74_F 149_A 0.86 0.05
61_K 155_T 0.86 0.05
23_G 90_P 0.85 0.05
166_R 63_V 0.85 0.05
107_L 270_V 0.85 0.05
65_E 154_S 0.85 0.05
157_M 29_A 0.84 0.05
92_K 91_L 0.84 0.05
172_T 39_V 0.84 0.05
133_S 73_G 0.84 0.05
92_K 169_L 0.84 0.05
74_F 113_I 0.84 0.05
111_G 197_L 0.84 0.05
34_M 77_T 0.84 0.05
196_T 237_G 0.84 0.05
103_A 158_S 0.84 0.05
67_P 105_A 0.83 0.05
159_V 270_V 0.82 0.04
96_S 240_I 0.82 0.04
67_P 121_P 0.82 0.04
126_N 226_L 0.82 0.04
131_D 293_G 0.82 0.04
75_L 107_A 0.82 0.04
41_S 230_V 0.81 0.04
107_L 262_V 0.81 0.04
98_V 151_V 0.81 0.04
166_R 62_W 0.81 0.04
110_A 172_S 0.81 0.04
93_N 90_P 0.81 0.04
42_I 64_F 0.80 0.04
63_I 180_C 0.80 0.04
121_H 117_D 0.80 0.04
93_N 66_L 0.80 0.04
113_I 124_A 0.80 0.04
97_Q 91_L 0.80 0.04
90_M 296_F 0.79 0.04
70_L 202_Q 0.79 0.04
175_T 218_G 0.79 0.04
151_T 43_Y 0.79 0.04
109_G 135_V 0.79 0.04
53_G 117_D 0.78 0.04
39_L 287_P 0.78 0.04
75_L 235_F 0.78 0.04
110_A 17_A 0.78 0.04
161_M 270_V 0.78 0.04
62_D 262_V 0.78 0.04
24_T 220_M 0.77 0.04
103_A 58_D 0.77 0.04
117_I 74_V 0.77 0.04
94_N 150_Q 0.77 0.04
94_N 66_L 0.77 0.04
165_A 255_L 0.77 0.04
50_L 101_L 0.77 0.04
94_N 166_H 0.77 0.04
201_M 295_G 0.77 0.04
94_N 230_V 0.77 0.04
172_T 92_P 0.77 0.04
38_I 84_V 0.77 0.04
172_T 149_A 0.77 0.04
48_A 33_N 0.77 0.04
75_L 154_S 0.77 0.04
157_M 182_C 0.77 0.04
104_L 233_Q 0.77 0.04
171_S 243_G 0.77 0.04
61_K 47_I 0.76 0.04
42_I 160_I 0.76 0.04
49_V 91_L 0.76 0.04
107_L 158_S 0.76 0.04
161_M 39_V 0.76 0.04
166_R 77_T 0.76 0.04
93_N 270_V 0.76 0.03
133_S 184_F 0.76 0.03
67_P 159_N 0.76 0.03
172_T 77_T 0.75 0.03
137_S 150_Q 0.75 0.03
23_G 89_S 0.75 0.03
162_V 269_L 0.75 0.03
134_G 154_S 0.75 0.03
118_Y 113_I 0.75 0.03
83_Y 160_I 0.75 0.03
166_R 162_D 0.75 0.03
96_S 65_R 0.74 0.03
86_A 230_V 0.74 0.03
23_G 184_F 0.74 0.03
141_A 33_N 0.74 0.03
137_S 260_A 0.74 0.03
74_F 84_V 0.74 0.03
114_G 229_L 0.74 0.03
101_W 103_L 0.74 0.03
148_L 113_I 0.73 0.03
77_L 273_L 0.73 0.03
50_L 76_L 0.73 0.03
166_R 99_T 0.73 0.03
38_I 27_A 0.73 0.03
41_S 159_N 0.73 0.03
171_S 270_V 0.73 0.03
26_I 131_A 0.73 0.03
46_T 149_A 0.73 0.03
101_W 55_V 0.73 0.03
83_Y 238_V 0.73 0.03
166_R 59_A 0.73 0.03
165_A 236_V 0.72 0.03
197_V 120_S 0.72 0.03
103_A 264_L 0.72 0.03
148_L 130_E 0.72 0.03
167_R 166_H 0.72 0.03
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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