May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

ISCA - NIFU
UniProt: P0AAC8 - P0ACD4
Length: 235
Sequences: 235
Seq/Len: 1.01
I_Prob: 0.07

ISCA - Iron-binding protein IscA
Paralog alert: 0.68 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: ERPA ISCA SUFA
NIFU - NifU-like protein
Paralog alert: 0.07 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NIFU
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
30_V 118_I 1.59 0.07
44_F 104_I 1.34 0.03
4_T 121_Y 1.32 0.03
28_L 15_R 1.31 0.03
3_I 4_S 1.29 0.03
12_R 122_K 1.28 0.03
90_F 117_A 1.19 0.02
26_L 23_N 1.15 0.02
64_V 82_L 1.13 0.02
88_F 27_V 1.12 0.02
7_D 119_A 1.11 0.02
55_F 52_I 1.11 0.02
28_L 22_N 1.10 0.02
83_G 61_Y 1.05 0.01
59_G 42_K 1.04 0.01
75_T 34_A 1.04 0.01
13_V 42_K 1.02 0.01
55_F 84_E 1.02 0.01
84_L 61_Y 1.01 0.01
28_L 47_V 1.01 0.01
94_N 121_Y 1.00 0.01
10_A 64_G 1.00 0.01
6_S 9_D 0.99 0.01
62_V 52_I 0.99 0.01
77_L 22_N 0.99 0.01
81_K 82_L 0.99 0.01
7_D 82_L 0.98 0.01
78_D 7_V 0.98 0.01
87_G 56_A 0.97 0.01
71_F 96_E 0.97 0.01
66_G 28_G 0.96 0.01
89_K 46_K 0.96 0.01
3_I 26_N 0.96 0.01
47_E 52_I 0.95 0.01
105_F 80_K 0.95 0.01
43_E 29_S 0.94 0.01
28_L 94_A 0.94 0.01
95_V 86_Q 0.94 0.01
95_V 118_I 0.92 0.01
5_L 92_D 0.92 0.01
63_V 88_I 0.91 0.01
86_E 31_M 0.91 0.01
103_E 104_I 0.91 0.01
26_L 25_E 0.90 0.01
6_S 26_N 0.90 0.01
8_S 119_A 0.90 0.01
72_L 118_I 0.89 0.01
5_L 82_L 0.89 0.01
89_K 121_Y 0.88 0.01
12_R 115_K 0.88 0.01
100_G 10_H 0.87 0.01
33_S 13_N 0.87 0.01
63_V 92_D 0.86 0.01
28_L 77_V 0.86 0.01
19_N 122_K 0.86 0.01
100_G 124_K 0.85 0.01
97_D 119_A 0.85 0.01
5_L 81_S 0.83 0.01
76_Q 31_M 0.83 0.01
5_L 119_A 0.83 0.01
72_L 42_K 0.83 0.01
8_S 84_E 0.82 0.01
38_M 46_K 0.82 0.01
71_F 72_L 0.82 0.01
36_S 78_K 0.81 0.01
28_L 23_N 0.81 0.01
18_A 87_A 0.80 0.01
16_F 73_V 0.80 0.01
79_F 9_D 0.80 0.01
107_V 72_L 0.80 0.01
105_F 14_P 0.80 0.01
33_S 104_I 0.79 0.01
77_L 49_D 0.79 0.01
3_I 74_T 0.79 0.01
83_G 108_I 0.79 0.01
64_V 73_V 0.79 0.01
72_L 54_E 0.78 0.01
44_F 57_R 0.78 0.01
70_Q 108_I 0.78 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1562 seconds.