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OPENSEQ.org

USPE - YEIL
UniProt: P0AAC0 - P0A9E9
Length: 535
Sequences: 307
Seq/Len: 0.62
I_Prob: 0.00

USPE - Universal stress protein E
Paralog alert: 0.38 [within 20: 0.09] - ratio of genomes with paralogs
Cluster includes: USPE
YEIL - Regulatory protein YeiL
Paralog alert: 0.78 [within 20: 0.09] - ratio of genomes with paralogs
Cluster includes: CRP FNR YEIL
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
112_V 70_I 1.35 0.00
29_Q 29_I 1.34 0.00
296_L 146_I 1.30 0.00
299_I 55_N 1.28 0.00
112_V 150_Q 1.23 0.00
282_G 174_L 1.18 0.00
138_C 69_F 1.14 0.00
135_L 70_I 1.12 0.00
11_I 184_G 1.12 0.00
238_I 42_L 1.10 0.00
264_G 164_E 1.09 0.00
233_R 186_L 1.08 0.00
296_L 60_L 1.08 0.00
35_I 49_L 1.08 0.00
159_A 166_L 1.06 0.00
143_W 186_L 1.05 0.00
199_P 42_L 1.05 0.00
193_H 33_G 1.05 0.00
14_N 193_Y 1.05 0.00
76_A 186_L 1.04 0.00
4_Y 197_N 1.04 0.00
106_S 146_I 1.03 0.00
7_M 202_S 1.03 0.00
158_V 146_I 1.03 0.00
158_V 42_L 1.01 0.00
77_K 197_N 1.00 0.00
158_V 196_K 1.00 0.00
135_L 42_L 1.00 0.00
187_V 146_I 1.00 0.00
266_V 34_Q 0.99 0.00
221_I 146_I 0.99 0.00
224_Q 146_I 0.98 0.00
192_V 60_L 0.98 0.00
82_A 195_I 0.97 0.00
188_N 146_I 0.96 0.00
276_I 99_K 0.96 0.00
168_Y 28_Y 0.96 0.00
303_Q 197_N 0.94 0.00
234_Q 23_F 0.94 0.00
11_I 172_H 0.93 0.00
32_G 91_C 0.93 0.00
180_T 195_I 0.92 0.00
139_P 93_C 0.92 0.00
281_L 190_K 0.92 0.00
40_P 28_Y 0.91 0.00
231_A 186_L 0.91 0.00
159_A 62_D 0.91 0.00
254_I 79_D 0.91 0.00
73_H 200_Q 0.90 0.00
282_G 166_L 0.90 0.00
265_I 178_A 0.90 0.00
59_A 193_Y 0.90 0.00
71_W 39_L 0.89 0.00
172_L 62_D 0.89 0.00
4_Y 205_A 0.89 0.00
70_A 29_I 0.89 0.00
113_L 52_T 0.88 0.00
35_I 37_S 0.88 0.00
256_D 197_N 0.88 0.00
35_I 21_F 0.88 0.00
90_V 48_R 0.88 0.00
171_A 202_S 0.88 0.00
282_G 155_Y 0.88 0.00
163_A 21_F 0.88 0.00
276_I 60_L 0.88 0.00
69_T 146_I 0.88 0.00
154_G 29_I 0.87 0.00
69_T 99_K 0.87 0.00
265_I 40_F 0.86 0.00
58_T 79_D 0.86 0.00
126_I 141_R 0.86 0.00
194_L 70_I 0.86 0.00
262_Q 37_S 0.86 0.00
3_M 200_Q 0.86 0.00
269_G 174_L 0.85 0.00
163_A 92_W 0.85 0.00
69_T 54_A 0.85 0.00
287_Q 85_V 0.85 0.00
33_G 86_Q 0.85 0.00
72_I 33_G 0.85 0.00
168_Y 203_G 0.85 0.00
185_E 146_I 0.84 0.00
4_Y 33_G 0.84 0.00
92_W 204_L 0.84 0.00
273_R 72_E 0.84 0.00
254_I 150_Q 0.84 0.00
176_L 126_N 0.84 0.00
112_V 186_L 0.84 0.00
166_E 77_D 0.84 0.00
66_S 79_D 0.84 0.00
160_V 173_L 0.83 0.00
292_L 200_Q 0.83 0.00
46_Y 68_C 0.83 0.00
83_G 29_I 0.83 0.00
120_D 177_L 0.83 0.00
84_V 196_K 0.83 0.00
238_I 197_N 0.83 0.00
186_Q 185_L 0.83 0.00
102_Q 29_I 0.83 0.00
142_V 197_N 0.83 0.00
157_L 187_I 0.83 0.00
112_V 91_C 0.83 0.00
235_K 49_L 0.83 0.00
239_N 197_N 0.83 0.00
160_V 57_R 0.83 0.00
168_Y 151_E 0.82 0.00
269_G 168_V 0.82 0.00
166_E 28_Y 0.82 0.00
169_H 185_L 0.82 0.00
255_P 177_L 0.82 0.00
70_A 130_L 0.82 0.00
72_I 37_S 0.82 0.00
284_T 182_H 0.82 0.00
106_S 199_K 0.81 0.00
40_P 85_V 0.81 0.00
254_I 17_D 0.81 0.00
104_V 36_P 0.81 0.00
156_A 93_C 0.81 0.00
183_L 80_H 0.81 0.00
209_L 206_L 0.81 0.00
288_V 87_A 0.81 0.00
133_H 29_I 0.81 0.00
191_E 183_D 0.81 0.00
177_V 150_Q 0.80 0.00
190_T 109_T 0.80 0.00
239_N 128_V 0.80 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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