May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

YBGC - YBGF
UniProt: P0A8Z3 - P45955
Length: 397
Sequences: 245
Seq/Len: 0.63
I_Prob: 0.00

YBGC - Acyl-CoA thioester hydrolase YbgC
Paralog alert: 0.65 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: FADM YBGC
YBGF - Uncharacterized protein YbgF
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YBGF
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
22_V 173_Y 1.34 0.00
112_V 255_Q 1.28 0.00
95_R 158_R 1.27 0.00
89_S 178_Y 1.23 0.00
55_V 101_L 1.19 0.00
66_Y 195_K 1.17 0.00
25_H 251_D 1.16 0.00
30_A 183_N 1.16 0.00
132_F 166_F 1.14 0.00
32_Y 82_Y 1.12 0.00
76_L 243_V 1.09 0.00
132_F 179_L 1.08 0.00
96_I 98_I 1.06 0.00
74_D 259_R 1.06 0.00
82_I 220_M 1.06 0.00
92_F 247_Y 1.05 0.00
106_E 231_G 1.05 0.00
61_K 64_S 1.05 0.00
96_I 259_R 1.05 0.00
115_D 219_A 1.05 0.00
40_L 91_Q 1.04 0.00
109_V 101_L 1.04 0.00
131_E 247_Y 1.03 0.00
72_L 99_D 1.03 0.00
90_L 142_A 1.03 0.00
26_A 236_A 1.03 0.00
69_P 211_P 1.03 0.00
124_L 227_M 1.02 0.00
26_A 216_A 1.02 0.00
58_V 223_V 1.02 0.00
103_L 257_Q 1.01 0.00
55_V 252_G 1.01 0.00
72_L 12_L 1.01 0.00
88_T 232_D 1.01 0.00
128_I 205_S 1.00 0.00
8_W 191_Y 0.99 0.00
73_D 12_L 0.97 0.00
43_H 170_I 0.97 0.00
24_Y 194_G 0.97 0.00
92_F 186_L 0.96 0.00
44_H 98_I 0.96 0.00
56_A 240_Y 0.95 0.00
87_G 53_S 0.94 0.00
80_T 48_I 0.94 0.00
31_F 250_T 0.94 0.00
72_L 190_N 0.94 0.00
69_P 188_Q 0.94 0.00
90_L 130_T 0.93 0.00
67_Y 68_S 0.93 0.00
124_L 200_A 0.93 0.00
9_P 174_P 0.93 0.00
42_H 70_I 0.93 0.00
73_D 253_A 0.93 0.00
8_W 92_K 0.93 0.00
12_V 9_L 0.91 0.00
57_F 211_P 0.91 0.00
52_A 85_N 0.91 0.00
120_K 79_E 0.91 0.00
123_A 91_Q 0.91 0.00
22_V 58_Q 0.91 0.00
95_R 252_G 0.91 0.00
66_Y 72_S 0.90 0.00
58_V 130_T 0.90 0.00
71_R 218_D 0.90 0.00
53_E 250_T 0.90 0.00
112_V 159_Q 0.90 0.00
115_D 220_M 0.90 0.00
38_E 197_D 0.90 0.00
112_V 98_I 0.90 0.00
128_I 64_S 0.89 0.00
74_D 136_P 0.89 0.00
128_I 250_T 0.88 0.00
80_T 201_Y 0.88 0.00
26_A 226_I 0.88 0.00
14_Y 213_S 0.88 0.00
112_V 181_N 0.88 0.00
20_G 229_D 0.88 0.00
47_Q 243_V 0.87 0.00
73_D 14_L 0.87 0.00
30_A 198_D 0.87 0.00
71_R 127_D 0.86 0.00
12_V 72_S 0.86 0.00
35_A 180_P 0.86 0.00
74_D 81_Q 0.85 0.00
6_F 168_N 0.85 0.00
131_E 178_Y 0.85 0.00
111_V 176_S 0.85 0.00
72_L 60_Q 0.85 0.00
103_L 195_K 0.84 0.00
14_Y 91_Q 0.84 0.00
66_Y 59_L 0.83 0.00
65_E 225_V 0.83 0.00
31_F 203_F 0.83 0.00
31_F 249_G 0.83 0.00
76_L 62_Q 0.83 0.00
60_R 211_P 0.83 0.00
64_V 207_V 0.83 0.00
8_W 226_I 0.82 0.00
55_V 177_T 0.82 0.00
86_R 203_F 0.82 0.00
72_L 213_S 0.82 0.00
82_I 254_K 0.82 0.00
89_S 142_A 0.82 0.00
78_I 179_L 0.81 0.00
60_R 49_S 0.81 0.00
88_T 220_M 0.81 0.00
22_V 183_N 0.81 0.00
90_L 166_F 0.81 0.00
75_M 120_A 0.81 0.00
64_V 164_V 0.81 0.00
37_T 178_Y 0.81 0.00
11_R 221_F 0.81 0.00
61_K 150_I 0.80 0.00
66_Y 189_L 0.80 0.00
65_E 220_M 0.80 0.00
85_M 210_Y 0.80 0.00
72_L 77_I 0.80 0.00
96_I 79_E 0.80 0.00
54_R 220_M 0.79 0.00
124_L 136_P 0.79 0.00
72_L 59_L 0.79 0.00
39_M 239_V 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0998 seconds.