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YBGF - Uncharacterized protein YbgF
UniProt: P45955 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12854
Length: 263 (261)
Sequences: 416
Seq/Len: 1.59
YBGF
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
158_R 161_D 4.02 1.00
41_R 46_E 3.183 1.00
42_V 45_L 2.497 1.00
218_D 252_G 1.942 0.98
142_A 176_S 1.873 0.97
38_V 42_V 1.822 0.96
188_Q 222_K 1.757 0.95
181_N 215_K 1.726 0.95
69_D 74_R 1.718 0.94
77_I 80_N 1.677 0.94
41_R 45_L 1.658 0.93
160_D 193_K 1.653 0.93
66_N 70_I 1.65 0.93
195_K 198_D 1.62 0.92
152_L 165_A 1.616 0.92
21_P 24_A 1.586 0.91
181_N 185_W 1.584 0.91
215_K 222_K 1.506 0.88
153_V 189_L 1.503 0.87
203_F 222_K 1.5 0.87
200_A 223_V 1.499 0.87
207_V 216_A 1.477 0.86
148_A 168_N 1.455 0.85
208_K 244_I 1.453 0.85
100_S 105_G 1.411 0.83
80_N 84_L 1.409 0.82
143_N 147_N 1.394 0.81
224_G 240_Y 1.39 0.81
42_V 46_E 1.377 0.80
44_Q 49_S 1.375 0.80
217_A 224_G 1.367 0.80
191_Y 229_D 1.343 0.78
154_Q 159_Q 1.34 0.78
10_L 13_S 1.314 0.76
227_M 239_V 1.302 0.75
142_A 178_Y 1.3 0.75
183_N 202_Y 1.292 0.74
170_I 179_L 1.289 0.74
95_L 99_D 1.289 0.74
90_R 94_I 1.284 0.73
127_D 130_T 1.277 0.73
245_S 249_G 1.273 0.73
146_Y 181_N 1.272 0.72
42_V 47_R 1.254 0.71
181_N 222_K 1.25 0.71
220_M 242_Q 1.238 0.70
181_N 184_Y 1.234 0.69
29_P 32_S 1.233 0.69
196_K 229_D 1.233 0.69
62_Q 67_Q 1.229 0.69
243_V 250_T 1.224 0.68
150_I 191_Y 1.218 0.68
224_G 243_V 1.217 0.68
232_D 235_K 1.217 0.68
52_H 56_L 1.212 0.67
181_N 203_F 1.211 0.67
197_D 230_K 1.208 0.67
98_I 249_G 1.206 0.67
185_W 203_F 1.203 0.66
243_V 256_A 1.191 0.65
160_D 208_K 1.186 0.65
146_Y 215_K 1.179 0.64
44_Q 53_S 1.175 0.64
74_R 207_V 1.17 0.63
141_N 144_T 1.168 0.63
44_Q 47_R 1.161 0.62
64_S 217_A 1.159 0.62
184_Y 215_K 1.159 0.62
209_N 237_K 1.154 0.62
60_Q 153_V 1.153 0.62
58_Q 186_L 1.151 0.61
7_H 23_A 1.147 0.61
5_F 11_S 1.145 0.61
147_N 151_A 1.14 0.60
1_M 5_F 1.139 0.60
163_M 193_K 1.135 0.60
173_Y 178_Y 1.134 0.60
154_Q 157_S 1.124 0.59
153_V 192_N 1.119 0.58
110_S 123_T 1.115 0.58
39_E 48_I 1.11 0.57
13_S 16_V 1.104 0.57
82_Y 86_Q 1.103 0.56
3_S 12_L 1.098 0.56
169_F 176_S 1.096 0.56
126_A 130_T 1.094 0.56
12_L 15_L 1.093 0.55
204_A 216_A 1.091 0.55
191_Y 196_K 1.09 0.55
62_Q 187_G 1.086 0.55
1_M 12_L 1.083 0.54
87_V 90_R 1.078 0.54
73_L 99_D 1.078 0.54
5_F 9_L 1.077 0.54
237_K 241_Q 1.074 0.53
125_T 128_A 1.073 0.53
109_Q 117_G 1.072 0.53
114_D 125_T 1.07 0.53
183_N 215_K 1.069 0.53
176_S 188_Q 1.059 0.52
220_M 246_K 1.053 0.51
215_K 218_D 1.053 0.51
221_F 229_D 1.052 0.51
145_D 219_A 1.05 0.51
25_F 29_P 1.048 0.51
96_L 263_M 1.047 0.51
159_Q 221_F 1.046 0.50
185_W 215_K 1.046 0.50
10_L 14_L 1.045 0.50
24_A 33_V 1.045 0.50
222_K 255_Q 1.044 0.50
39_E 43_T 1.043 0.50
181_N 188_Q 1.029 0.49
87_V 176_S 1.028 0.49
12_L 20_A 1.028 0.49
250_T 253_A 1.027 0.48
146_Y 185_W 1.027 0.48
4_N 7_H 1.027 0.48
146_Y 218_D 1.026 0.48
48_I 51_A 1.026 0.48
19_A 26_A 1.025 0.48
86_Q 165_A 1.021 0.48
83_Q 96_L 1.019 0.48
214_P 217_A 1.016 0.47
62_Q 186_L 1.015 0.47
100_S 104_G 1.013 0.47
1_M 4_N 1.008 0.47
121_S 131_A 1.002 0.46
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
2xevA30.463999.90.691Contact Map0.56
3qkyA10.513399.80.72Contact Map0.612
2yhcA10.471599.60.761Contact Map0.447
2xdjA60.311899.40.783Contact Map0.762
3fflA40.524799.40.789Contact Map0.499
2dbaA10.551399.40.79Contact Map0.407
4i2zA10.475399.40.792Contact Map0.517
3urzA20.448799.30.795Contact Map0.372
2c2lA40.448799.30.802Contact Map0.616
1wao140.456399.20.807Contact Map0.557
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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