| UniProt: | P77712 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13251 | ||
| Length: | 132 (130) | ||
| Sequences: | 3499 | ||
| Seq/Len: | 26.92 |
| FADM
Paralog alert: 0.65 [within 20: 0.03] - ratio of genomes with paralogs Cluster includes: FADM YBGC |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 55_N | 59_N | 3.77 | 1.00 | |
| 64_A | 70_L | 2.6 | 1.00 | |
| 27_L | 102_A | 2.591 | 1.00 | |
| 64_A | 99_V | 2.419 | 1.00 | |
| 62_R | 97_Q | 2.309 | 1.00 | |
| 57_N | 103_L | 2.299 | 1.00 | |
| 4_Q | 69_L | 2.271 | 1.00 | |
| 61_R | 101_D | 2.23 | 1.00 | |
| 73_T | 89_V | 2.214 | 1.00 | |
| 2_Q | 71_T | 2.188 | 1.00 | |
| 22_R | 25_E | 2.175 | 1.00 | |
| 77_Q | 87_S | 2.119 | 1.00 | |
| 110_D | 113_T | 2.037 | 1.00 | |
| 24_L | 56_I | 2.029 | 1.00 | |
| 24_L | 58_I | 2.019 | 1.00 | |
| 2_Q | 73_T | 2.009 | 1.00 | |
| 27_L | 100_A | 1.849 | 1.00 | |
| 4_Q | 71_T | 1.849 | 1.00 | |
| 63_P | 114_Q | 1.834 | 1.00 | |
| 88_Q | 104_I | 1.757 | 1.00 | |
| 75_Q | 87_S | 1.737 | 1.00 | |
| 30_A | 74_S | 1.689 | 1.00 | |
| 121_G | 125_E | 1.648 | 1.00 | |
| 92_L | 95_E | 1.624 | 1.00 | |
| 58_I | 100_A | 1.611 | 1.00 | |
| 59_N | 101_D | 1.576 | 1.00 | |
| 89_V | 98_V | 1.561 | 1.00 | |
| 8_R | 11_H | 1.538 | 1.00 | |
| 6_K | 36_E | 1.516 | 1.00 | |
| 89_V | 101_D | 1.507 | 1.00 | |
| 91_T | 98_V | 1.506 | 1.00 | |
| 73_T | 91_T | 1.492 | 1.00 | |
| 78_Q | 85_I | 1.486 | 1.00 | |
| 18_V | 26_F | 1.478 | 1.00 | |
| 28_E | 31_R | 1.465 | 1.00 | |
| 82_K | 116_A | 1.448 | 1.00 | |
| 30_A | 72_I | 1.434 | 1.00 | |
| 72_I | 90_I | 1.42 | 1.00 | |
| 68_D | 92_L | 1.414 | 1.00 | |
| 85_I | 103_L | 1.408 | 1.00 | |
| 80_N | 83_S | 1.389 | 0.99 | |
| 10_Y | 25_E | 1.378 | 0.99 | |
| 6_K | 69_L | 1.35 | 0.99 | |
| 27_L | 90_I | 1.327 | 0.99 | |
| 50_A | 111_L | 1.236 | 0.98 | |
| 120_E | 123_L | 1.224 | 0.98 | |
| 7_V | 26_F | 1.219 | 0.98 | |
| 4_Q | 93_E | 1.213 | 0.98 | |
| 83_S | 105_T | 1.21 | 0.98 | |
| 11_H | 25_E | 1.183 | 0.98 | |
| 6_K | 33_D | 1.172 | 0.98 | |
| 52_V | 109_I | 1.171 | 0.98 | |
| 85_I | 105_T | 1.165 | 0.97 | |
| 124_R | 128_E | 1.163 | 0.97 | |
| 75_Q | 89_V | 1.152 | 0.97 | |
| 56_I | 104_I | 1.149 | 0.97 | |
| 33_D | 37_N | 1.104 | 0.96 | |
| 55_N | 105_T | 1.102 | 0.96 | |
| 43_W | 46_A | 1.102 | 0.96 | |
| 21_A | 25_E | 1.099 | 0.96 | |
| 7_V | 18_V | 1.097 | 0.96 | |
| 20_N | 56_I | 1.096 | 0.96 | |
| 77_Q | 103_L | 1.088 | 0.96 | |
| 36_E | 67_S | 1.066 | 0.95 | |
| 71_T | 93_E | 1.059 | 0.95 | |
| 12_L | 16_Q | 1.056 | 0.95 | |
| 61_R | 98_V | 1.043 | 0.94 | |
| 109_I | 114_Q | 1.036 | 0.94 | |
| 122_E | 125_E | 1.012 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2essA | 1 | 0.9924 | 100 | 0.203 | Contact Map | 0.647 |
| 2ownA | 2 | 0.9924 | 100 | 0.205 | Contact Map | 0.779 |
| 1njkA | 4 | 1 | 99.9 | 0.219 | Contact Map | 0.854 |
| 2hljA | 1 | 1 | 99.9 | 0.222 | Contact Map | 0.71 |
| 4gakA | 1 | 0.9848 | 99.9 | 0.225 | Contact Map | 0.776 |
| 2aliA | 1 | 0.9697 | 99.9 | 0.229 | Contact Map | 0.732 |
| 4i4jA | 8 | 1 | 99.9 | 0.234 | Contact Map | 0.883 |
| 2xemA | 4 | 0.9924 | 99.9 | 0.237 | Contact Map | 0.864 |
| 3ck1A | 2 | 0.9924 | 99.9 | 0.239 | Contact Map | 0.786 |
| 2o5uA | 3 | 0.9924 | 99.9 | 0.24 | Contact Map | 0.732 |
Sequence Conservation (Image Generated using WebLogo v3)