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OPENSEQ.org

RUVA - YEBC
UniProt: P0A809 - P0A8A0
Length: 449
Sequences: 523
Seq/Len: 1.17
I_Prob: 0.01

RUVA - Holliday junction ATP-dependent DNA helicase RuvA
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RUVA
YEBC - Probable transcriptional regulatory protein YebC
Paralog alert: 0.23 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YEBC YEEN
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
84_K 37_K 1.33 0.01
131_R 226_C 1.27 0.00
5_L 106_R 1.25 0.00
130_D 156_E 1.21 0.00
195_I 237_E 1.19 0.00
61_Y 160_E 1.17 0.00
129_K 67_N 1.16 0.00
95_A 171_D 1.16 0.00
175_Q 106_R 1.14 0.00
163_A 30_R 1.14 0.00
91_S 26_T 1.10 0.00
54_R 96_A 1.09 0.00
119_K 201_I 1.08 0.00
93_M 72_R 1.08 0.00
26_Y 123_N 1.08 0.00
118_K 197_E 1.06 0.00
81_V 221_D 1.04 0.00
89_I 16_A 1.01 0.00
31_P 174_T 1.01 0.00
69_R 140_I 0.97 0.00
113_L 236_G 0.97 0.00
166_A 97_I 0.95 0.00
76_I 160_E 0.94 0.00
105_E 245_T 0.94 0.00
102_V 194_D 0.94 0.00
70_T 233_Y 0.93 0.00
177_A 129_S 0.93 0.00
83_P 208_M 0.93 0.00
96_Q 44_D 0.93 0.00
181_V 225_D 0.91 0.00
83_P 11_R 0.91 0.00
71_L 133_L 0.91 0.00
125_I 239_S 0.90 0.00
172_Y 17_Q 0.90 0.00
153_S 112_E 0.89 0.00
22_G 244_A 0.89 0.00
39_P 72_R 0.88 0.00
195_I 168_G 0.88 0.00
161_Q 160_E 0.87 0.00
77_K 57_L 0.87 0.00
110_L 22_G 0.87 0.00
101_A 102_L 0.87 0.00
112_K 208_M 0.87 0.00
102_V 172_V 0.87 0.00
35_F 110_V 0.87 0.00
26_Y 119_K 0.86 0.00
112_K 220_I 0.86 0.00
43_Q 192_K 0.86 0.00
164_V 112_E 0.85 0.00
89_I 91_G 0.85 0.00
28_V 160_E 0.84 0.00
9_I 156_E 0.84 0.00
20_E 117_F 0.83 0.00
161_Q 238_I 0.83 0.00
181_V 24_I 0.83 0.00
101_A 179_M 0.83 0.00
173_K 152_E 0.82 0.00
109_A 53_V 0.82 0.00
127_E 143_E 0.82 0.00
177_A 100_E 0.82 0.00
116_I 57_L 0.82 0.00
19_I 148_D 0.81 0.00
56_D 113_V 0.81 0.00
102_V 173_Y 0.81 0.00
27_E 2_A 0.81 0.00
184_I 214_P 0.81 0.00
11_E 141_S 0.81 0.00
110_L 75_G 0.81 0.00
6_R 202_P 0.81 0.00
154_P 148_D 0.81 0.00
55_E 96_A 0.81 0.00
133_K 113_V 0.81 0.00
129_K 81_N 0.80 0.00
21_V 82_M 0.80 0.00
61_Y 24_I 0.80 0.00
56_D 129_S 0.79 0.00
94_S 124_L 0.79 0.00
116_I 13_R 0.79 0.00
163_A 124_L 0.79 0.00
131_R 221_D 0.78 0.00
153_S 217_M 0.78 0.00
73_K 142_F 0.78 0.00
16_L 112_E 0.78 0.00
131_R 146_D 0.78 0.00
104_R 244_A 0.78 0.00
169_A 237_E 0.78 0.00
188_D 189_A 0.77 0.00
81_V 243_A 0.77 0.00
74_E 160_E 0.77 0.00
78_T 233_Y 0.77 0.00
128_M 202_P 0.77 0.00
118_K 89_G 0.77 0.00
19_I 136_K 0.77 0.00
172_Y 31_E 0.77 0.00
169_A 243_A 0.77 0.00
81_V 84_T 0.76 0.00
17_V 243_A 0.76 0.00
129_K 83_E 0.76 0.00
119_K 240_D 0.76 0.00
18_L 113_V 0.76 0.00
12_K 233_Y 0.76 0.00
18_L 167_D 0.76 0.00
49_T 212_T 0.76 0.00
166_A 123_N 0.76 0.00
119_K 82_M 0.75 0.00
81_V 59_N 0.75 0.00
172_Y 91_G 0.75 0.00
116_I 16_A 0.75 0.00
31_P 189_A 0.75 0.00
47_V 28_I 0.75 0.00
16_L 37_K 0.75 0.00
172_Y 50_R 0.75 0.00
13_Q 172_V 0.75 0.00
116_I 236_G 0.75 0.00
102_V 175_A 0.75 0.00
81_V 77_D 0.74 0.00
116_I 183_R 0.74 0.00
90_L 143_E 0.74 0.00
94_S 86_I 0.74 0.00
183_K 181_K 0.74 0.00
114_P 22_G 0.74 0.00
83_P 23_K 0.74 0.00
123_R 166_D 0.74 0.00
119_K 24_I 0.74 0.00
46_I 67_N 0.73 0.00
172_Y 243_A 0.73 0.00
48_F 131_A 0.73 0.00
12_K 110_V 0.73 0.00
179_R 150_I 0.73 0.00
202_A 166_D 0.73 0.00
86_A 102_L 0.73 0.00
36_Y 188_A 0.73 0.00
179_R 112_E 0.73 0.00
178_S 112_E 0.73 0.00
101_A 42_D 0.72 0.00
12_K 246_L 0.72 0.00
61_Y 198_V 0.72 0.00
18_L 166_D 0.72 0.00
95_A 221_D 0.72 0.00
12_K 123_N 0.72 0.00
124_L 37_K 0.72 0.00
136_H 188_A 0.72 0.00
181_V 53_V 0.72 0.00
24_V 162_V 0.72 0.00
200_R 246_L 0.72 0.00
116_I 124_L 0.72 0.00
118_K 186_L 0.72 0.00
89_I 81_N 0.71 0.00
102_V 142_F 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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