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OPENSEQ.org

RECO - RPOE
UniProt: P0A7H3 - P0AGB6
Length: 433
Sequences: 254
Seq/Len: 0.60
I_Prob: 0.00

RECO - DNA repair protein RecO
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RECO
RPOE - RNA polymerase sigma-E factor
Paralog alert: 0.65 [within 20: 0.13] - ratio of genomes with paralogs
Cluster includes: FECI RPOE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
219_G 14_V 1.60 0.00
51_Q 40_Y 1.48 0.00
116_C 189_I 1.46 0.00
202_L 50_V 1.37 0.00
19_S 81_T 1.35 0.00
96_L 61_L 1.26 0.00
53_F 69_A 1.25 0.00
49_A 61_L 1.24 0.00
53_F 68_S 1.24 0.00
15_W 53_A 1.20 0.00
216_Y 46_V 1.19 0.00
67_K 135_I 1.18 0.00
22_L 161_A 1.16 0.00
58_L 122_M 1.15 0.00
17_E 12_E 1.13 0.00
209_T 185_V 1.13 0.00
54_T 167_V 1.12 0.00
53_F 52_E 1.11 0.00
26_T 34_A 1.10 0.00
66_V 9_V 1.09 0.00
183_F 189_I 1.09 0.00
9_V 33_V 1.09 0.00
223_K 50_V 1.07 0.00
227_L 141_D 1.06 0.00
13_R 182_D 1.06 0.00
114_L 146_I 1.05 0.00
35_V 102_E 1.05 0.00
4_W 35_S 1.05 0.00
112_D 50_V 1.04 0.00
191_L 146_I 1.03 0.00
17_E 146_I 1.03 0.00
101_E 134_T 1.02 0.00
196_F 154_L 1.01 0.00
23_D 117_N 1.01 0.00
35_V 143_R 1.00 0.00
154_S 67_D 1.00 0.00
66_V 27_V 0.99 0.00
70_R 79_V 0.99 0.00
10_L 13_R 0.99 0.00
216_Y 162_I 0.99 0.00
18_T 146_I 0.98 0.00
73_E 61_L 0.98 0.00
41_S 14_V 0.97 0.00
24_V 62_D 0.97 0.00
160_D 122_M 0.96 0.00
166_Y 34_A 0.96 0.00
41_S 135_I 0.96 0.00
25_F 96_S 0.95 0.00
186_R 143_R 0.95 0.00
45_T 46_V 0.95 0.00
26_T 107_E 0.95 0.00
55_P 24_L 0.95 0.00
164_Y 153_G 0.94 0.00
9_V 12_E 0.94 0.00
10_L 143_R 0.94 0.00
52_P 93_P 0.94 0.00
160_D 110_G 0.94 0.00
53_F 62_D 0.94 0.00
213_L 131_V 0.94 0.00
27_E 47_P 0.93 0.00
224_S 121_L 0.93 0.00
21_M 34_A 0.92 0.00
155_G 127_L 0.92 0.00
224_S 125_E 0.92 0.00
39_A 124_S 0.92 0.00
88_S 33_V 0.92 0.00
17_E 63_S 0.91 0.00
137_A 99_D 0.91 0.00
62_G 75_Y 0.91 0.00
51_Q 46_V 0.91 0.00
78_A 182_D 0.90 0.00
40_R 32_K 0.90 0.00
34_L 134_T 0.90 0.00
102_Y 117_N 0.90 0.00
41_S 108_S 0.90 0.00
123_V 61_L 0.89 0.00
136_L 122_M 0.89 0.00
146_V 158_E 0.89 0.00
158_V 49_V 0.88 0.00
98_R 97_D 0.88 0.00
7_A 27_V 0.88 0.00
41_S 4_Q 0.87 0.00
5_Q 8_Q 0.87 0.00
160_D 125_E 0.87 0.00
148_F 185_V 0.87 0.00
110_F 170_V 0.87 0.00
58_L 53_A 0.87 0.00
66_V 143_R 0.87 0.00
52_P 108_S 0.86 0.00
84_I 100_A 0.86 0.00
33_R 35_S 0.86 0.00
58_L 127_L 0.86 0.00
194_R 52_E 0.86 0.00
27_E 190_R 0.86 0.00
222_L 165_C 0.86 0.00
118_Q 181_I 0.86 0.00
37_K 128_R 0.85 0.00
197_P 140_E 0.85 0.00
53_F 90_G 0.85 0.00
151_C 184_K 0.85 0.00
144_Y 38_S 0.85 0.00
89_G 10_L 0.84 0.00
48_G 8_Q 0.84 0.00
186_R 152_D 0.84 0.00
32_V 12_E 0.84 0.00
44_S 35_S 0.84 0.00
43_R 99_D 0.84 0.00
13_R 40_Y 0.84 0.00
196_F 129_Q 0.84 0.00
126_T 21_A 0.83 0.00
219_G 44_G 0.83 0.00
158_V 5_L 0.83 0.00
196_F 120_N 0.83 0.00
169_E 181_I 0.83 0.00
51_Q 97_D 0.83 0.00
9_V 154_L 0.82 0.00
84_I 126_E 0.82 0.00
33_R 117_N 0.82 0.00
29_S 53_A 0.82 0.00
57_L 164_D 0.82 0.00
116_C 143_R 0.82 0.00
224_S 34_A 0.82 0.00
100_L 18_D 0.82 0.00
14_P 67_D 0.82 0.00
137_A 52_E 0.81 0.00
36_A 11_V 0.81 0.00
26_T 133_R 0.81 0.00
18_T 106_F 0.81 0.00
47_K 186_Q 0.81 0.00
21_M 182_D 0.81 0.00
26_T 20_K 0.81 0.00
117_I 130_I 0.81 0.00
66_V 110_G 0.81 0.00
21_M 120_N 0.80 0.00
117_I 55_I 0.80 0.00
1_M 167_V 0.80 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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