May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

PTH - RHLB
UniProt: P0A7D1 - P0A8J8
Length: 615
Sequences: 455
Seq/Len: 0.85
I_Prob: 0.00

PTH - Peptidyl-tRNA hydrolase
Paralog alert: 0.03 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: PTH
RHLB - ATP-dependent RNA helicase RhlB
Paralog alert: 0.90 [within 20: 0.15] - ratio of genomes with paralogs
Cluster includes: DBPA DEAD RHLB RHLE SRMB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
106_K 347_T 1.32 0.00
146_V 221_V 1.29 0.00
59_V 311_V 1.26 0.00
113_G 221_V 1.25 0.00
36_R 164_L 1.25 0.00
134_R 183_F 1.25 0.00
146_V 225_Q 1.21 0.00
134_R 318_R 1.08 0.00
52_V 312_A 1.08 0.00
180_G 320_L 1.07 0.00
140_P 221_V 1.07 0.00
32_A 333_L 1.06 0.00
15_E 325_V 1.03 0.00
99_P 198_S 1.01 0.00
184_A 262_F 1.01 0.00
143_K 231_I 0.99 0.00
32_A 362_E 0.99 0.00
67_F 126_K 0.99 0.00
140_P 307_L 0.99 0.00
54_L 251_I 0.98 0.00
83_R 312_A 0.98 0.00
152_G 260_I 0.98 0.00
180_G 262_F 0.98 0.00
70_L 139_I 0.97 0.00
140_P 219_I 0.97 0.00
36_R 178_D 0.96 0.00
96_L 221_V 0.95 0.00
20_R 113_L 0.94 0.00
93_H 263_A 0.93 0.00
47_G 359_L 0.92 0.00
181_L 211_E 0.91 0.00
89_I 70_Y 0.91 0.00
101_G 313_T 0.91 0.00
67_F 273_W 0.90 0.00
188_L 126_K 0.90 0.00
96_L 225_Q 0.90 0.00
143_K 294_K 0.90 0.00
89_I 41_P 0.89 0.00
138_G 361_C 0.89 0.00
117_L 248_Q 0.89 0.00
138_G 262_F 0.88 0.00
73_K 263_A 0.88 0.00
7_V 101_H 0.88 0.00
12_P 213_M 0.87 0.00
82_F 231_I 0.86 0.00
104_K 313_T 0.86 0.00
36_R 39_A 0.86 0.00
5_L 246_L 0.85 0.00
171_R 330_N 0.85 0.00
161_L 138_L 0.85 0.00
12_P 34_P 0.84 0.00
106_K 287_T 0.84 0.00
179_D 131_L 0.84 0.00
145_K 320_L 0.84 0.00
37_A 261_I 0.84 0.00
70_L 52_Q 0.84 0.00
133_L 358_S 0.84 0.00
74_A 183_F 0.84 0.00
135_I 139_I 0.83 0.00
133_L 135_V 0.83 0.00
184_A 187_P 0.83 0.00
180_G 211_E 0.83 0.00
81_F 318_R 0.83 0.00
51_R 285_L 0.83 0.00
138_G 330_N 0.83 0.00
138_G 125_D 0.82 0.00
127_N 325_V 0.82 0.00
148_G 373_T 0.82 0.00
188_L 105_E 0.82 0.00
59_V 71_L 0.82 0.00
84_I 190_N 0.81 0.00
13_G 100_I 0.81 0.00
89_I 247_L 0.81 0.00
4_K 221_V 0.81 0.00
25_A 324_A 0.81 0.00
154_P 163_V 0.81 0.00
139_H 207_E 0.80 0.00
34_R 164_L 0.80 0.00
65_T 240_N 0.80 0.00
145_K 225_Q 0.79 0.00
102_V 267_H 0.79 0.00
136_G 344_I 0.79 0.00
117_L 372_E 0.79 0.00
56_G 113_L 0.79 0.00
166_I 183_F 0.79 0.00
93_H 219_I 0.78 0.00
139_H 221_V 0.78 0.00
98_L 311_V 0.78 0.00
99_P 139_I 0.78 0.00
89_I 256_P 0.77 0.00
106_K 313_T 0.77 0.00
143_K 207_E 0.77 0.00
177_F 118_A 0.77 0.00
146_V 216_A 0.77 0.00
129_N 145_L 0.77 0.00
139_H 328_V 0.77 0.00
167_D 304_R 0.77 0.00
171_R 332_D 0.77 0.00
91_V 329_F 0.77 0.00
117_L 353_S 0.76 0.00
74_A 282_R 0.76 0.00
20_R 273_W 0.76 0.00
26_W 330_N 0.76 0.00
145_K 262_F 0.76 0.00
84_I 131_L 0.76 0.00
108_G 263_A 0.75 0.00
143_K 247_L 0.75 0.00
37_A 64_L 0.75 0.00
26_W 64_L 0.75 0.00
23_A 126_K 0.75 0.00
134_R 332_D 0.75 0.00
149_F 219_I 0.75 0.00
180_G 282_R 0.74 0.00
139_H 231_I 0.74 0.00
147_V 221_V 0.74 0.00
52_V 28_G 0.74 0.00
145_K 216_A 0.74 0.00
30_L 330_N 0.74 0.00
45_F 314_D 0.74 0.00
138_G 299_L 0.74 0.00
67_F 322_I 0.74 0.00
93_H 28_G 0.73 0.00
134_R 111_T 0.73 0.00
96_L 213_M 0.73 0.00
136_G 35_I 0.73 0.00
12_P 124_Y 0.73 0.00
49_T 289_D 0.73 0.00
57_E 325_V 0.73 0.00
179_D 82_V 0.72 0.00
188_L 351_G 0.72 0.00
149_F 95_E 0.72 0.00
149_F 276_L 0.72 0.00
6_I 284_G 0.72 0.00
146_V 213_M 0.72 0.00
28_V 268_R 0.72 0.00
46_F 213_M 0.72 0.00
184_A 216_A 0.72 0.00
31_L 135_V 0.72 0.00
17_A 152_N 0.72 0.00
186_N 231_I 0.72 0.00
34_R 276_L 0.72 0.00
137_I 249_T 0.72 0.00
126_N 304_R 0.72 0.00
75_V 115_L 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0188 seconds.