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OPENSEQ.org

PT1 - PTHP
UniProt: P08839 - P0AA04
Length: 660
Sequences: 677
Seq/Len: 1.04
I_Prob: 0.00

PT1 - Phosphoenolpyruvate-protein phosphotransferase
Paralog alert: 0.54 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: PT1 PT1P PTFX1 PTFX2
PTHP - Phosphocarrier protein HPr
Paralog alert: 0.51 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: PTHP PTSO
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
133_I 16_T 1.30 0.00
167_E 42_A 1.29 0.00
115_L 51_Q 1.18 0.00
525_M 8_I 1.16 0.00
235_V 61_V 1.06 0.00
83_E 27_K 1.05 0.00
7_A 48_F 1.04 0.00
275_I 77_L 1.03 0.00
75_G 16_T 1.00 0.00
232_T 63_I 1.00 0.00
133_I 27_K 0.98 0.00
84_E 43_S 0.98 0.00
212_V 7_T 0.96 0.00
520_L 50_L 0.94 0.00
258_D 8_I 0.94 0.00
203_V 42_A 0.94 0.00
220_L 8_I 0.93 0.00
311_E 33_I 0.93 0.00
434_A 22_F 0.93 0.00
83_E 24_K 0.93 0.00
132_D 18_P 0.92 0.00
326_S 32_E 0.92 0.00
531_P 48_F 0.91 0.00
244_E 79_K 0.90 0.00
478_S 16_T 0.88 0.00
75_G 20_A 0.87 0.00
457_T 47_L 0.87 0.00
79_L 47_L 0.87 0.00
234_E 72_K 0.86 0.00
481_V 22_F 0.86 0.00
220_L 24_K 0.86 0.00
311_E 76_H 0.86 0.00
178_G 82_A 0.86 0.00
412_E 10_A 0.85 0.00
233_N 29_F 0.85 0.00
75_G 12_N 0.85 0.00
41_E 72_K 0.84 0.00
157_I 33_I 0.84 0.00
381_S 65_A 0.83 0.00
81_E 27_K 0.82 0.00
167_E 52_T 0.82 0.00
131_R 65_A 0.81 0.00
83_E 47_L 0.81 0.00
22_D 44_A 0.81 0.00
133_I 49_K 0.81 0.00
560_E 79_K 0.81 0.00
525_M 22_F 0.81 0.00
137_L 7_T 0.79 0.00
281_V 38_N 0.78 0.00
421_D 80_L 0.78 0.00
235_V 63_I 0.78 0.00
123_L 51_Q 0.77 0.00
494_A 64_S 0.77 0.00
485_I 75_E 0.77 0.00
316_A 7_T 0.77 0.00
257_K 48_F 0.77 0.00
282_E 33_I 0.77 0.00
229_V 35_V 0.76 0.00
495_E 20_A 0.76 0.00
484_L 26_A 0.76 0.00
382_A 66_E 0.76 0.00
14_G 44_A 0.75 0.00
107_V 48_F 0.75 0.00
434_A 1_M 0.75 0.00
168_T 52_T 0.74 0.00
337_G 67_G 0.74 0.00
511_A 18_P 0.74 0.00
194_A 58_G 0.74 0.00
158_L 6_V 0.74 0.00
556_P 33_I 0.74 0.00
139_R 24_K 0.74 0.00
501_M 46_S 0.74 0.00
541_N 76_H 0.74 0.00
525_M 77_L 0.73 0.00
450_S 45_K 0.73 0.00
263_T 38_N 0.73 0.00
377_I 50_L 0.73 0.00
268_Q 66_E 0.73 0.00
163_L 19_A 0.73 0.00
99_T 47_L 0.72 0.00
297_T 39_G 0.72 0.00
199_L 74_V 0.72 0.00
322_E 29_F 0.72 0.00
89_I 1_M 0.72 0.00
26_I 60_V 0.71 0.00
501_M 27_K 0.71 0.00
485_I 72_K 0.71 0.00
151_A 63_I 0.71 0.00
276_G 18_P 0.71 0.00
436_A 22_F 0.71 0.00
318_K 40_K 0.71 0.00
271_V 81_M 0.71 0.00
43_F 30_T 0.71 0.00
276_G 55_L 0.70 0.00
53_Q 35_V 0.70 0.00
147_I 63_I 0.70 0.00
302_M 33_I 0.70 0.00
277_T 12_N 0.70 0.00
556_P 31_S 0.70 0.00
447_D 31_S 0.70 0.00
137_L 57_Q 0.70 0.00
418_K 68_E 0.70 0.00
402_L 48_F 0.70 0.00
531_P 14_L 0.70 0.00
499_T 74_V 0.69 0.00
414_R 14_L 0.69 0.00
515_L 46_S 0.69 0.00
124_K 10_A 0.69 0.00
313_Q 49_K 0.69 0.00
430_V 59_T 0.69 0.00
370_L 16_T 0.69 0.00
383_F 70_E 0.69 0.00
72_I 21_Q 0.69 0.00
227_V 55_L 0.68 0.00
500_G 19_A 0.68 0.00
237_D 65_A 0.68 0.00
530_I 77_L 0.68 0.00
236_I 48_F 0.68 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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