May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
PABA - PYRB
UniProt: P00903 - P0A786
Length: 498
Sequences: 659
Seq/Len: 1.36
I_Prob: 0.00
PABA - Para-aminobenzoate synthase glutamine amidotransferase component II
Paralog alert: 0.89 [within 20: 0.07] - ratio of genomes with paralogs
Cluster includes: HIS5 PABA 		PYRB - Aspartate carbamoyltransferase catalytic chain
Paralog alert: 0.85 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: OTC1 OTC2 PYRB YGEW
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
142_D 24_V 1.10 0.00
35_T 265_L 1.05 0.00
29_K 265_L 1.03 0.00
121_P 45_I 0.98 0.00
5_I 11_I 0.94 0.00
132_V 78_A 0.93 0.00
49_I 210_W 0.92 0.00
14_N 210_W 0.90 0.00
38_D 221_A 0.89 0.00
80_L 272_D 0.86 0.00
185_L 125_V 0.86 0.00
186_H 146_I 0.84 0.00
43_K 62_T 0.83 0.00
178_H 265_L 0.83 0.00
31_N 74_F 0.83 0.00
61_I 265_L 0.82 0.00
25_D 159_A 0.82 0.00
69_Y 24_V 0.80 0.00
66_I 156_L 0.80 0.00
80_L 84_K 0.79 0.00
172_I 88_T 0.79 0.00
129_S 185_F 0.79 0.00
183_N 120_S 0.78 0.00
111_G 144_F 0.74 0.00
33_A 212_L 0.74 0.00
85_M 121_G 0.74 0.00
39_I 157_H 0.73 0.00
2_I 184_R 0.72 0.00
183_N 47_S 0.72 0.00
186_H 154_D 0.72 0.00
151_E 125_V 0.71 0.00
134_P 24_V 0.71 0.00
25_D 24_V 0.71 0.00
73_L 225_I 0.71 0.00
31_N 123_V 0.70 0.00
137_L 248_F 0.70 0.00
130_L 39_L 0.70 0.00
25_D 97_S 0.70 0.00
131_V 219_V 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.038 seconds.