May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
Apobec Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [K:0040] and [M:0048]
- A F I L V M W Y D E K R H N Q S T G P C
A -0.1 0 -0.1 0.4 0 0 0 -0.1 -0.4 -0.4 0 -0.3 -0.2 0.7 0.6 -0.3 0.8 -0.1 0 0
F 0 0 0 0 0 0 0 0.3 -0.1 -0.2 0 -0.1 0 -0.1 -0.1 -0.1 0 0 0 0
I -0.2 0 -0.1 -0.1 0 0 0 1 -0.4 0.8 -0.1 -0.5 0.2 0.4 -0.2 -0.4 0 -0.1 0 0
L -0.3 0 -0.1 -0.1 -0.1 -0.1 0 0.6 0.4 -0.5 0.7 -0.5 -0.2 -0.1 0.4 0.6 0.1 -0.1 0 -0.1
V 0.7 0 0 0 0 0 0 0 -0.1 -0.2 0 -0.2 0 -0.1 -0.1 -0.1 -0.1 0 0 0
M 0 0 0 0 0 0 0 0 -0.1 -0.2 0 0.3 0 -0.1 0 -0.1 -0.1 0 0 0
W 0 0 0 0 0 0 0 -0.1 -0.1 -0.2 0 -0.2 -0.1 -0.1 -0.1 -0.2 0.7 0 0 0
Y -0.1 0 -0.1 0.4 0 0 0 -0.2 -0.4 -0.2 0.4 0.3 0.3 0.1 -0.1 0.3 -0.2 -0.1 0 0
D 0 0 0 0 0 0 0 0 -0.1 -0.1 0 -0.1 0.3 -0.1 -0.1 -0.1 -0.1 0 0 0
E 0 0 0 0 0 0 0 -0.1 -0.1 0.1 0 -0.2 -0.1 -0.1 -0.1 0.2 -0.1 0 0 0
K -0.1 0 -0.1 -0.1 0.4 0.4 0 -0.1 -0.2 0.4 -0.1 0.1 -0.1 0.4 -0.2 -0.3 -0.2 -0.1 0 0
R -0.2 0 0.2 -0.1 -0.1 -0.1 0 -0.3 2 0.1 0.1 -0.3 0.4 -0.3 -0.3 -0.5 0 0.1 0 -0.1
H 0.3 0 0 -0.1 0 0 0 -0.1 0.7 -0.1 -0.1 -0.4 0.3 -0.2 -0.1 0.3 -0.2 -0.1 0 0
N 0 0 0 0 0 0 0 -0.1 -0.3 0.5 0.1 -0.3 0.1 0.3 -0.1 0.3 -0.1 -0.1 0 0
Q 0.2 0 0 -0.1 0 0 0 -0.1 0.2 0.8 -0.1 -0.5 -0.1 0 0 0.3 -0.2 -0.1 0 0
S -0.2 0 0.3 -0.1 -0.1 -0.1 0 -0.2 -0.3 0.3 -0.2 1.9 -0.2 0 -0.1 -0.2 -0.1 -0.1 0 -0.1
T -0.1 0 0 0 0 0 0 0 -0.2 0.5 -0.1 -0.2 -0.1 0.2 0.4 -0.2 0.1 -0.1 0 0
G -0.1 0 0 -0.1 0 0 0 -0.1 0.3 0.3 -0.1 0.1 0.1 -0.3 0.2 -0.3 -0.2 0.3 0 0
P 1 0 0 0 0 0 0 -0.1 -0.2 -0.3 -0.1 0.1 -0.1 -0.1 -0.1 0.1 -0.1 -0.1 0 0
C -0.3 0 -0.1 -0.1 -0.1 -0.1 -0.1 -0.4 -0.3 -0.6 -0.3 1.5 -0.4 -0.3 0.2 1 0.2 0.8 -0.1 0.4
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0040 0.6 -0.9 0.5 0.8 -0.7 -0.8 -0.8 0.3 -1 -0.8 0.2 1 0 0.1 0.2 1 -0.1 0 -0.3 1.5
0048 0.2 -0.5 -0.3 -0.3 -0.4 -0.3 -0.6 0 0.5 1.1 0.1 0.5 0 0.3 0.4 0.1 0.5 0.1 -0.6 -0.4
Select residue pair below:
i_j Score Prob
0040_0048 1.667 0.98
Local Interactions:
i_j Score Prob
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: L G K E F ...
Page generated in 0.0264 seconds.