May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

mep50 Return to Main Page

Instructions
  • Use the menu to the right to browse the coupling matrix.

Coupling matrix for [S:0306] and [H:0310]
- A F I L V M W Y D E K R H N Q S T G P C
A 0.3 -0.3 0.2 0 0.1 -0.1 0.2 -0.4 0.2 -0.1 -0.1 0.1 0.1 -0.2 -0.1 0.1 0.1 0.2 -0.1 -0.2
F 0.2 0 0.4 0.9 0.5 -0.2 -0.2 0 -0.2 -0.7 0.1 -0.1 -0.1 -0.4 -0.4 0 0.2 0.5 -0.3 -0.1
I -0.2 0.7 1 -0.2 0.7 0.2 0.2 0.3 -0.2 -0.4 -0.5 0 -0.3 -0.4 -0.1 -0.6 -0.3 0.1 0.3 0.4
L -0.1 0.5 -0.3 -0.6 0.3 -0.5 0.1 1 0.6 0 -0.2 0.1 -0.5 0.1 0 0.3 0.4 0.1 0 -0.7
V 0 0.2 -0.2 0.1 1 -0.1 1.2 0.1 0.1 -0.2 -0.4 -0.2 0.2 -0.5 -0.2 -0.2 -0.4 0.1 0.4 0
M 0 -0.2 -0.3 -0.3 -0.1 -0.3 -0.1 -0.4 0.9 0.5 -0.2 0.5 -0.3 0.6 0.2 -0.6 -0.5 0 -0.5 0.5
W -0.3 -0.1 -0.1 -0.2 -0.1 0.1 0 -0.1 0 0.2 0.8 -0.1 0.1 0 0.2 -0.2 0 -0.1 -0.1 -0.1
Y 0.1 0.2 0.7 0.6 -0.2 0.5 -0.2 -0.1 -0.3 -0.3 -0.5 -0.7 -0.2 -0.1 -0.1 0.2 -0.2 0.6 0 0.3
D 0.3 0.1 -0.3 0.6 -0.3 0.1 -0.5 -0.2 -0.5 0 0.4 1.2 0 -0.2 0.5 0.3 0.4 -0.1 -0.4 -0.2
E 0.2 -0.3 -0.2 -0.4 0 0 0.2 -0.3 -0.8 0.8 0.8 0.7 0 -0.3 0.1 -0.3 -0.3 0.3 -0.2 -0.2
K -0.1 -0.3 0.4 0.3 0.3 -0.4 0.2 -0.2 -0.1 0.4 -0.3 -0.7 0 0.7 -0.5 0.1 0.1 -0.1 0 -0.5
R 0.4 -0.6 0.3 -0.2 0.4 -0.6 0.6 -0.6 0.1 0 0.2 -0.2 -0.1 0.2 0.1 0.1 -0.3 -0.1 -0.6 1
H -0.1 0.4 -0.6 0.3 -0.5 -0.2 -0.6 0 -0.6 0.2 0 -0.5 1.3 0.4 -0.1 -0.1 -0.2 -0.3 1.4 -0.5
N 0 -0.7 0.1 -0.3 -0.1 0.2 -0.6 -0.5 0.4 0.3 -0.2 -0.4 0 0.3 0.2 0.7 0.7 -0.6 0.8 -0.4
Q -0.3 0.1 0 -0.6 -0.5 -0.2 0.1 0.4 -0.3 -0.3 0.2 0.2 -0.3 -0.1 0.3 -0.3 -0.4 -0.1 -0.1 0.5
S 0.1 -0.2 -0.4 0.1 -0.4 0.2 -1 -0.2 0.1 0.5 0.4 0.2 0.2 0.2 0.5 0.3 0.2 0.1 0.2 0
T 0.1 0.2 -0.3 0 -0.5 0.8 -0.4 -0.1 -0.3 0.2 0.3 0.1 0.3 0.6 0.3 0.3 0.1 -0.1 -0.4 -0.6
G 0.3 -0.2 -0.1 0.1 -0.7 -0.1 0.1 0.3 0.2 0.2 -0.2 0.2 0.2 -0.1 -0.2 -0.1 -0.2 0.2 -0.6 0.5
P -0.2 0.3 0.1 0.3 0 0.1 0.1 1.1 -0.3 -0.6 0.1 0.1 -0.3 -0.1 -0.6 -0.2 0.1 -0.5 0.5 0.2
C -0.4 -0.3 -0.3 -0.2 0.2 0 -0.3 -0.1 0.6 -0.1 0 0 -0.6 -0.1 0.5 0.2 0.1 0 0.7 -0.2

Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0306 0.6 0.1 0.8 0.8 0.8 -0.8 -1 -0.4 0.4 -0.7 -0.1 0.5 0.5 0.2 -0.7 1.1 0.4 0.2 -0.5 -0.3
0310 0.1 -0.9 -0.5 -0.1 -0.2 -0.9 -1.7 -0.7 0.8 0.5 0.4 0.6 -0.3 0.9 0.6 0.7 0.2 0.9 1.1 -0.9
Select residue pair below:
i_j Score Prob
0306_0310 1.027 0.94
0310_0326 0.753 0.69
0310_0328 0.555 0.36
Local Interactions:
i_j Score Prob
0308_0310 1.901 1.00
0310_0311 1.195 0.98
0309_0310 1.157 0.97
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: M R K E T ...

Page generated in 0.0325 seconds.