OPENSEQ.org -1516281329- GREMLIN Submission

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mep50

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Coupling matrix for [L:0261] and [L:0271]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.3	0.3	0.7	0.4	0.7	0.5	-0.3	-0.6	-0.1	-0.1	-0.2	-0.3	0	-0.2	-0.1	-0.3	-0.2	0.8	-0.3	0.2
F	0.2	-0.4	0	-0.1	-0.2	0.4	-0.1	-0.1	-0.1	-0.1	-0.1	0.1	-0.1	0.6	0.1	0.3	-0.2	0	-0.2	0.3
I	0.3	0.8	0.5	0.5	0.3	0.7	0.1	0.5	-0.2	-0.2	-0.3	-0.2	0	-0.4	-0.2	-0.3	0	-0.5	-0.5	0.3
L	0	0.5	0.4	1	0.3	0.5	0.3	0.6	-0.3	-0.1	0	0.4	0	-0.3	-0.3	-0.7	-0.5	-0.2	-0.6	0
V	0.8	0.5	0.7	0.5	0.5	0.4	-0.2	0.1	-0.1	-0.3	-0.4	-0.4	-0.6	-0.6	-0.1	-0.3	0.2	-0.2	-0.2	0.5
M	-0.3	0.2	0	1	0.1	0.5	-0.3	0	-0.1	-0.1	-0.1	0.1	-0.1	-0.1	-0.2	0.2	0.1	-0.3	-0.2	0
W	0.1	-0.5	-0.3	0.5	-0.5	-0.1	0	0	0	0	0	0	0	0	0	0	0	0	0.1	0
Y	-0.3	-0.2	0.2	-0.3	0.2	0	0	0.1	0	0	0	0	0	0	0	0	0	0	0	-0.1
D	-0.1	-0.2	-0.1	-0.1	-0.1	-0.1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
E	0.1	-0.4	0.1	-0.1	0.2	-0.1	0	-0.1	0	0	0	0	0	0	0	0	0	0	0	-0.1
K	-0.2	0.4	-0.3	0.1	-0.3	-0.2	0	-0.1	0.1	0	0	0	0	0	0	0	0.2	0.2	0	-0.1
R	0	0.1	-0.6	-0.1	0.1	-0.2	0	-0.1	0	0	0	0	0	0	0	0	0	0	0	0.2
H	-0.2	0	0.1	-0.2	0.1	-0.2	0	-0.1	0	0	0	0	0	0	0	0	0.2	0	0	-0.1
N	0.1	-0.3	0.4	-0.4	-0.2	-0.3	-0.1	-0.1	0	0	0	0	0	0	-0.1	0.2	0.2	0	0	-0.1
Q	-0.2	-0.6	-0.1	0	-0.4	0.2	0	0.2	0	0	0	0	0.2	0	0	0	0	0	0	0.4
S	0.1	0.2	-0.1	0.3	0.6	-0.5	-0.2	0.2	0	0	-0.1	-0.1	0.2	0.4	0.4	0	-0.1	0.1	-0.1	-0.6
T	-0.2	-0.2	-0.1	0.1	0.2	0.1	-0.1	-0.3	0	0	0.2	-0.1	-0.1	-0.1	0.3	0.3	0	-0.1	0.1	0.1
G	0.2	1	-0.3	-0.1	0.2	-0.3	-0.1	0.2	0	0	0	0.1	0	0	-0.1	0.3	-0.2	0.1	-0.1	-0.4
P	-0.1	0.6	0.3	-0.4	0	0.2	-0.1	-0.2	0	0	0	0	0	0	-0.1	0.1	0.1	-0.1	0.2	-0.2
C	0.2	-0.2	0.4	0.2	0.3	-0.2	0.1	-0.2	-0.1	-0.1	-0.1	0	-0.2	-0.1	-0.2	-0.2	0.1	0	0.9	-0.2

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0261	1.1	0.7	1.2	0.9	0.6	0.6	-1.3	-0.5	-1.1	-0.7	-0.5	-0.5	-0.7	-0.8	-0.9	0.7	0.6	0.5	0.1	0.5
0271	1.1	1.8	2.8	3.1	2.9	1.3	-0.5	-0.1	-1.8	-1.8	-1.7	-1.1	-1.4	-1.5	-0.9	-0.6	-0.2	-0.6	-1.1	0.1

Select residue pair below:

i_j	Score	Prob
0219_0261	1.396	0.99
0231_0261	1.343	0.99
0229_0261	1.272	0.99
0237_0261	0.940	0.89
0217_0261	0.807	0.76
0261_0273	0.800	0.75
0261_0271	0.662	0.54

Local Interactions:

i_j	Score	Prob
0261_0262	0.884	0.84
0260_0261	0.591	0.42
0261_0263	0.559	0.37

See all coupling residues
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