OPENSEQ.org -1516281329- GREMLIN Submission

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mep50

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Coupling matrix for [V:0141] and [F:0183]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	-0.2	-0.6	0.7	1.3	0.3	0.6	-0.8	-1.1	0	-0.3	0.1	0.2	-0.3	-0.2	0.2	-0.2	0.7	-0.4	0	-0.6
F	0	0.3	0.1	0.5	0.5	0	-0.6	0.2	-0.3	0	-0.2	0	0	-0.1	-0.2	0.3	-0.9	-0.1	0.3	0.6
I	-0.2	0.7	0.2	-0.1	0	0.1	0.1	0.3	0.2	0	0.3	0.2	0.2	0	0	0.1	-0.4	0	-0.4	0
L	1.1	1	0.1	-0.6	0.1	0.1	-0.5	1.1	-0.4	-0.1	-0.4	-0.4	-0.5	-0.3	-0.5	0.7	0.2	1.2	-0.5	0.2
V	-0.1	0.5	0.8	0.3	0.5	0.2	0.7	-0.1	-0.1	-0.1	-0.3	-0.4	0.2	0.3	0.3	-0.5	0	-0.5	-0.5	0.1
M	0.6	0.6	-0.1	-0.5	0.4	0.5	-0.3	0.7	-0.1	-0.1	-0.1	-0.1	-0.1	-0.1	0.1	-0.2	0.1	0.2	-0.2	-0.1
W	-0.2	0.4	-0.4	0.5	-0.2	-0.2	0.1	-0.1	0	0	0.2	0	0	0	0	-0.1	-0.1	-0.1	-0.1	-0.2
Y	-0.1	-0.2	-0.3	0.2	0.3	-0.3	1.5	1	0.2	-0.2	-0.3	-0.2	0	-0.3	-0.2	-0.4	-0.7	-0.5	0.6	0.8
D	0.1	-0.2	-0.3	-0.3	0.2	-0.1	0	-0.1	0	0	0	0	0	0	0	0	0	0	0	0
E	0	-0.3	-0.4	-0.3	-0.1	0.1	0	0.2	0	0	0	0	0	0	0	0	0	0	0	-0.1
K	-0.1	0.2	-0.3	-0.2	-0.3	-0.1	0	-0.1	0	0	0	0	0	0	0	0	0.2	0	0	0
R	-0.2	0	-0.2	-0.1	0	0.1	-0.1	-0.1	0	0	0	0.2	0	0	0	0	0.2	0	0	0.1
H	-0.2	-0.3	0.3	-0.2	0.2	0.1	0	0.3	0	0	0	0	0	0	0	0	-0.1	-0.1	0	-0.1
N	-0.1	0	-0.3	-0.1	-0.3	0.2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Q	0.1	-0.2	-0.2	-0.2	-0.3	-0.1	0	-0.1	0	0	0	0	0	0	0	0	0.2	0	0	0
S	-0.3	0.8	0.1	0.8	-0.2	-0.5	0	-0.2	-0.1	-0.1	-0.1	0	-0.1	-0.1	0.1	0.1	0	-0.2	0.1	-0.6
T	-0.7	0.2	0.2	0.7	-0.1	-0.4	0	-0.2	-0.1	0.3	-0.1	-0.1	-0.1	-0.1	-0.1	0.1	0.4	-0.2	0.1	0.1
G	0.7	-0.8	-0.1	0.1	0.1	0.1	-0.3	-0.5	0	-0.1	0.2	0	0	0	0	-0.1	0.1	-0.1	-0.1	0.5
P	0.1	-0.1	0	-0.4	-0.2	-0.1	0	-0.1	0	0	0	0	0	0	0	0	0	0	0	0
C	0.6	-0.4	1.6	0.5	0.6	-0.1	-0.2	-0.5	-0.1	-0.1	-0.1	-0.1	-0.1	-0.1	-0.1	-0.2	-0.1	0	-0.1	-0.9

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0141	0.1	1.2	2.1	2.3	2	1.1	-0.8	0.9	-1.1	-0.9	-1.1	-0.5	-0.5	-1.1	-1.2	-0.3	0.5	-0.8	-1	-0.8
0183	1	1.8	2.3	2.8	2.2	0.7	-0.8	0.7	-1.2	-1.1	-1.2	-1	-1.1	-1.1	-1	-0.8	-0.3	-1.1	-0.6	0

Select residue pair below:

i_j	Score	Prob
0141_0183	2.050	1.00
0183_0197	1.045	0.94
0175_0183	0.950	0.90
0149_0183	0.831	0.79
0173_0183	0.697	0.60

Local Interactions:

i_j

Score

Prob

See all coupling residues
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