OPENSEQ.org -1516281329- GREMLIN Submission

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mep50

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Coupling matrix for [T:0087] and [W:0088]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.5	0	0.4	0.6	0.7	0.4	0.2	-0.1	-0.6	-0.3	-0.2	-0.2	-0.1	-0.8	-0.2	0.2	0.4	-0.4	-0.1	0.2
F	-0.1	-0.3	0.2	0.1	0.2	0	0	-0.2	0	0.1	0	-0.2	0	-0.1	-0.1	0	0	0.4	0.1	0.1
I	0.3	-0.6	-0.7	-0.3	-0.1	-0.5	0	-0.7	-0.1	-0.1	0.5	1.3	-0.3	-0.2	0.7	0.9	-0.2	-0.1	0.2	0.6
L	0.5	-0.3	0.1	-0.2	0	-0.6	0	-0.1	0.1	0.1	-0.3	-0.2	0	0.1	0.1	0.6	-0.2	-0.4	0.9	0.1
V	0.1	-0.5	-0.3	0	0.1	-0.1	-0.1	-0.5	0.3	0.6	0.2	0.1	0.1	-0.4	0.1	0	0.1	0.3	0.2	0.3
M	0.3	0.4	-0.1	-0.2	-0.4	-0.1	0.3	-0.2	0	0.4	-0.1	-0.1	-0.2	0	-0.1	-0.1	-0.1	0	0	-0.3
W	0.5	-0.3	-0.1	-0.4	-0.1	-0.1	-0.1	0	0	0	0	-0.1	0	0.1	0	-0.1	-0.1	0	0.2	-0.1
Y	0	0.1	0.4	0	-0.6	-0.1	-0.4	0	0	-0.3	-0.1	-0.1	-0.2	0	0.1	-0.3	-0.2	-0.1	1.4	0.1
D	0.1	-0.5	0.5	-0.4	0.9	-0.6	-0.3	-0.4	-0.3	-0.4	0.4	0.6	0.8	0.8	0.4	0.6	0.3	-0.6	-0.8	0.1
E	-0.2	0.1	0.2	0.1	0.3	0.1	0.5	0.4	-0.1	0.3	0	-0.3	-0.6	0.1	-0.2	-0.4	-0.4	0	1.2	-0.4
K	-0.1	0.7	0.1	0.2	0.1	0.1	0.4	0.6	0	-0.4	-0.4	-0.6	0.1	0.2	-0.1	-0.2	-0.4	-0.3	-0.4	0.4
R	-0.1	1.1	0.1	0	0.1	-0.1	0.8	1.2	-0.1	-0.1	-0.2	-0.4	0.2	-0.2	0.1	-1	0.2	0.3	-0.5	-0.9
H	-0.3	0.1	0.4	0.4	-0.1	0.1	0	-0.6	0.2	-0.3	-0.2	-0.3	0.1	0.1	0	0.2	0.1	0.2	-0.1	0.2
N	-0.6	0.4	0.3	0.1	-0.3	-0.1	0.2	0.2	0	-0.1	-0.1	0.1	-0.2	-0.1	-0.1	-0.3	0.3	0.3	-0.2	-0.1
Q	-0.5	0.5	-0.2	-0.2	0	0.8	0.5	0.8	-0.1	0	-0.3	-0.1	0.4	0.4	-0.4	0.2	-0.5	-0.4	-0.3	-0.1
S	0	-0.1	0.5	0.5	0.1	0.3	0.3	-0.1	-0.3	-0.3	0.1	-0.2	0.3	-0.1	0.2	-0.1	0.1	-0.3	-0.3	0.2
T	0.2	0.2	0.1	0.3	0.1	0.3	-0.1	0.2	-0.2	-0.4	0.3	-0.3	0	0	-0.4	0.3	0.6	0.3	-0.6	0.5
G	-0.3	0.3	-0.1	-0.1	0.1	0.1	-0.4	0	-0.1	0.3	0	0.9	0.2	-0.1	0.2	0	-0.1	0	-0.6	-0.3
P	0.2	-0.2	-0.4	0	-0.4	-0.2	-0.5	0.6	0	-0.1	0	-0.1	0.2	0	-0.1	-0.1	0.1	0.4	-0.1	-0.1
C	0.2	0.1	-0.1	0.2	0.4	0.5	0.2	-0.1	0.2	0.7	-0.2	0.4	-0.5	-0.4	-0.1	-0.1	-0.1	0	-0.1	-0.3

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0087	0.8	-0.3	0.4	0.6	0.9	-0.5	-1.3	-0.6	0.2	0.3	-0.3	-0.2	0.1	-0.5	0.1	0.9	0.9	0.1	-1.3	0.8
0088	0.3	1.2	0.7	0.9	0.6	-0.2	0.6	0.9	-1.3	-0.5	-0.9	-0.4	-0.3	-0.9	-0.4	0	0.2	-0.2	0	0

Select residue pair below:

i_j	Score	Prob
0035_0087	1.980	1.00
0087_0132	1.931	1.00
0087_0131	1.190	0.98
0087_0133	0.919	0.87

Local Interactions:

i_j	Score	Prob
0086_0087	1.150	0.97
0085_0087	0.981	0.91
0087_0088	0.763	0.70

See all coupling residues
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