OPENSEQ.org -1516281329- GREMLIN Submission

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mep50

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Coupling matrix for [L:0086] and [T:0087]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0	0.1	0.5	0.2	0	0.3	0.5	-0.2	-0.3	0.7	0.3	0.4	-0.1	0.2	0.1	0.1	0.1	-0.6	-0.5	-0.3
F	0.6	0.3	0.1	0.1	0.7	-0.5	-0.1	0.3	1.1	0.4	-0.5	-0.9	0	-0.2	0.3	0	0	-0.2	-0.3	0.1
I	0.8	-0.5	-0.4	-0.2	-0.3	-0.2	-0.3	0	0.6	0.3	0.4	0.8	0	0.4	0.1	0.7	0.2	0.1	-0.5	0
L	0.9	-0.6	-0.6	-0.3	-0.6	-0.2	-0.3	0.5	0.8	0.5	0.3	0	0.6	0.1	0.7	0.7	0.1	0	-0.5	-0.1
V	0.9	-0.5	-0.5	-0.2	-0.2	-0.1	-0.9	-0.2	0.4	0.2	0.5	0.7	0.1	0.7	0.4	0.6	0.3	0.3	-0.7	0.3
M	0.4	0.1	-0.3	-0.7	-0.2	0	-0.3	-0.2	0.1	0.6	0.2	-0.1	0.6	0.3	0.6	0.1	0	-0.5	0.9	-0.3
W	-1.1	-0.1	1.4	0.4	1.2	-0.1	0	-0.1	-0.6	-0.2	-0.4	-0.3	-0.2	-0.1	-0.3	0	-0.3	-0.2	0	0
Y	0.4	0.1	0.1	0	0.1	0.4	0	0.6	-0.8	0	-0.3	-0.3	-0.3	-0.2	-0.6	-0.2	0	0	-0.1	0.7
D	-0.2	0	0.1	-0.1	-0.2	0	0.2	0	-0.2	0	-0.1	-0.1	-0.1	0	-0.1	-0.2	-0.1	0.2	0	-0.1
E	-0.6	0	0.1	0.1	0.6	0	0	0	-0.2	-0.1	-0.1	-0.1	-0.1	-0.1	0.1	-0.3	0.3	-0.1	0	0
K	-0.4	0	-0.1	0.6	-0.2	0	0	0	0	0.2	-0.1	0	-0.1	0	-0.1	-0.2	-0.2	-0.1	0.2	0.1
R	-0.8	-0.1	1.1	0	0.9	-0.1	0	-0.1	-0.5	-0.1	-0.2	0.1	0.1	-0.1	-0.2	-0.3	-0.2	0.1	0.2	-0.5
H	-0.1	0	0.1	-0.1	0	0	0	0	-0.1	-0.2	0	0.1	-0.1	0	-0.1	-0.3	0	0	0.2	-0.1
N	-0.3	0.2	-0.1	-0.1	-0.1	0	0	0.2	0.6	-0.1	0.2	-0.2	-0.1	0	-0.1	-0.3	-0.2	-0.1	0	0.2
Q	-0.1	0.2	0.1	0.2	0.1	-0.1	0	0	0.3	-0.2	-0.3	-0.3	-0.2	-0.1	-0.2	-0.1	-0.1	0.2	0	0
S	0.1	0.1	0.1	0.4	-0.6	0.2	-0.1	-0.2	-0.2	-0.4	-0.4	-0.3	0.8	0	0.7	-0.1	0.2	-0.1	0.1	0.2
T	0.9	-0.1	-0.6	0	-0.3	0.5	0.3	-0.4	0.1	-0.1	0.2	0.1	-0.4	-0.7	-0.6	0.6	0.1	0.1	0.3	0.2
G	-0.2	0.9	-0.4	0.5	0.1	-0.2	0.1	0	-0.8	-0.4	0	0.1	-0.4	-0.3	-0.2	-0.1	0.8	1.1	-0.2	0.1
P	-0.6	0.1	0.1	-0.1	0.6	-0.1	0.2	-0.1	-0.1	-0.1	-0.1	0.5	-0.2	-0.1	-0.1	0.3	-0.1	0	0	-0.5
C	0.6	-0.1	-0.1	0.1	-0.3	0.1	-0.2	-0.3	0.4	-0.4	0.2	0.3	0.1	0.1	0.1	0.2	-0.2	-0.1	-0.6	0.8

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0086	1.2	1	1.9	1.9	1.5	1	-1.4	-0.8	-1.1	-1	-1	-0.8	-0.9	-0.8	-1	0.7	0.1	0.1	-0.5	0.5
0087	0.8	-0.3	0.4	0.6	0.9	-0.5	-1.3	-0.6	0.2	0.3	-0.3	-0.2	0.1	-0.5	0.1	0.9	0.9	0.1	-1.3	0.8

Select residue pair below:

i_j	Score	Prob
0035_0087	1.980	1.00
0087_0132	1.931	1.00
0087_0131	1.190	0.98
0087_0133	0.919	0.87

Local Interactions:

i_j	Score	Prob
0086_0087	1.150	0.97
0085_0087	0.981	0.91
0087_0088	0.763	0.70

See all coupling residues
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