OPENSEQ.org -1516281329- GREMLIN Submission

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mep50

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Coupling matrix for [L:0086] and [V:0096]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.1	0.2	0.4	0.3	0.2	0.1	-0.2	-0.2	0	0.3	-0.2	-0.1	-0.2	-0.3	-0.2	0.2	0.1	-0.6	0	0.5
F	-0.2	0.5	0.3	-0.2	0	0.3	-0.1	-0.2	0.1	-0.2	-0.1	-0.2	1	-0.2	0.1	0.3	0.4	-0.8	-0.1	-0.2
I	0	0.1	0.1	0.1	0.2	0.4	-0.3	0.3	-0.2	-0.4	0.2	-0.1	-0.2	-0.1	-0.3	0.5	0.4	0.5	-0.3	0.2
L	0.1	0	0.1	0.3	0.4	-0.2	0.1	0.5	0	-0.1	-0.1	-0.5	-0.1	-0.6	0.3	0.8	0.2	0.7	-0.2	0
V	0.4	0.1	-0.1	0.2	0.2	-0.1	0	0.2	-0.3	-0.3	0	0	-0.2	0	-0.3	0.8	0.3	0.2	0	0.2
M	0	-0.3	0.6	0.5	0.1	-0.2	-0.1	-0.6	0.1	-0.1	-0.1	0.7	-0.3	-0.2	-0.1	-0.1	0.8	0.4	-0.1	-0.2
W	1.2	-0.1	-0.2	-0.1	-0.5	-0.1	0	-0.1	0	0	0	0	0	0	0	-0.6	-0.3	0.1	0	-0.2
Y	-0.3	-0.1	-0.5	-0.4	-0.7	0.1	0	-0.1	0	0.2	0	0	0	0	0	1.4	0.2	-0.3	0	-0.1
D	0.1	-0.1	-0.1	0.1	-0.2	0	0	0	0	0	0	0	0	0	0.1	-0.1	-0.4	0	0	0
E	0.3	-0.1	-0.2	-0.2	0.1	0	0	0	0	0	0	0.2	0	0	0	-0.4	-0.2	-0.1	0	-0.1
K	-0.2	-0.1	-0.2	0.1	0.1	0	0	0	0	0	0	0	0	0	0	-0.2	-0.2	0.2	0	-0.1
R	0.2	-0.2	-0.3	-0.3	0.4	0.2	0	0.3	0	0.2	0	0	0	0	0	-0.6	-0.7	-0.2	0.2	0.1
H	-0.2	-0.1	-0.2	0	-0.4	0	0	0	0	0	0	0	0	0	0.2	0	0.1	-0.1	0	0.1
N	-0.5	-0.1	0.3	-0.2	-0.2	0	0	0	0	0	0	0	0	0	0	-0.3	0.3	-0.1	0.2	0.1
Q	-0.2	-0.1	0.1	0	-0.4	-0.1	0	-0.1	0	0	0	0	0	0	0	-0.4	0.3	-0.1	0.2	-0.2
S	-0.3	0.3	0.8	0.1	0	0.3	0	0.1	0	0.1	-0.1	0.1	-0.1	0.8	-0.1	-0.6	-0.5	-0.1	-0.1	0
T	0.2	0.6	0.4	0.4	0.3	0	-0.1	-0.2	-0.1	0	-0.1	-0.1	-0.1	-0.1	0.2	0.1	-0.3	-0.1	-0.1	-0.6
G	-0.2	-0.4	0.3	0.3	0.6	-0.2	0	-0.1	-0.1	-0.1	0	-0.1	-0.1	-0.1	0	-0.4	0.1	0.5	0	0.3
P	-0.2	0.1	-0.3	0	0.4	-0.1	0.2	0.2	0	0	0	0	0.2	0	0	-0.7	-0.2	-0.2	0	0
C	0.2	0.1	0.2	0.4	0.1	-0.2	-0.1	0	0.1	-0.1	-0.1	0	-0.4	-0.1	-0.1	0.4	0.3	-0.4	-0.1	0.7

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0086	1.2	1	1.9	1.9	1.5	1	-1.4	-0.8	-1.1	-1	-1	-0.8	-0.9	-0.8	-1	0.7	0.1	0.1	-0.5	0.5
0096	0.9	0.5	1.4	1.4	1.3	0.2	-0.9	-0.1	-0.7	-0.7	-0.9	-0.4	-0.9	-0.7	-0.6	-0.1	0.7	0	-0.7	0.4

Select residue pair below:

i_j	Score	Prob
0079_0096	1.749	1.00
0096_0106	1.536	1.00
0056_0096	1.475	1.00
0096_0133	0.915	0.87
0096_0100	0.752	0.69
0086_0096	0.612	0.46
0096_0140	0.575	0.39

Local Interactions:

i_j	Score	Prob
0096_0098	1.023	0.93
0095_0096	0.954	0.90
0094_0096	0.551	0.36

See all coupling residues
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