OPENSEQ.org -1516281329- GREMLIN Submission

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mep50

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Coupling matrix for [L:0044] and [G:0045]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0	0.8	0.1	0.3	0.2	0.2	0.6	0.7	-0.3	0.1	-0.6	-0.7	-0.3	-0.3	-0.2	0.4	0.4	-0.4	-0.5	0.2
F	0.5	-0.8	-0.2	-0.6	0.1	0.4	0	-0.7	0.2	-0.2	-0.2	0	0.2	-0.1	0.1	0.7	0.9	-0.2	-0.1	0.3
I	0.8	0.1	0.1	0.1	-0.1	-0.4	-0.2	0.2	-0.2	-0.4	-0.4	0.1	0	0.1	-0.3	0.5	0.6	0.6	0	0.1
L	0.8	-0.4	0.4	0.4	0.3	0.1	-0.8	0	-0.3	0	-0.4	-0.4	-0.2	-0.1	0.5	0.5	0.4	0.6	0	0.6
V	0.5	-0.1	-0.1	0.1	0.1	-0.1	-0.3	0.6	-0.1	0.1	-0.2	-0.9	-0.3	0.1	-0.1	0.7	0.6	0.4	-0.5	0.2
M	0.3	-0.6	0.5	-0.5	0.5	-0.1	0.1	-0.6	0	-0.1	0.5	-0.2	-0.1	-0.1	-0.1	0	0.5	-0.1	-0.1	0.4
W	-0.1	-0.1	-0.2	0	-0.4	0	0	0.2	0	0.2	0	-0.1	0	0	0	0.5	0.4	-0.2	0	-0.1
Y	0	-0.1	0.1	-0.5	0	-0.4	-0.3	0	0	-0.1	0.1	0.6	0.4	-0.1	-0.1	0.3	0.8	-0.2	0.2	0
D	-0.2	0.1	-0.1	-0.1	0.1	0	0	0	0	0	0	0	0	0	0	-0.2	0	-0.1	0	0
E	0.1	0.2	-0.1	-0.1	0.1	0	0.1	0	0	0	0	0	0	0	0	-0.3	0	-0.1	0	0
K	-0.1	0	-0.1	-0.1	0.3	0	0	0	0	0	0	0	0	0	0	0	-0.2	-0.1	0	0
R	-0.8	0.2	-0.2	1.1	-0.3	0	0	-0.1	0.2	0	0.3	0.7	0.2	0.4	0	-0.8	-0.7	-0.4	0	-0.1
H	-0.5	0.4	-0.1	0.6	-0.4	0	0	0	0	0	0	0.3	0	0	0	-0.4	-0.1	0.1	0	-0.1
N	-0.3	-0.1	-0.2	0.1	0	0	0	-0.1	0	0	0.5	0.1	0	0	0	0	-0.5	0.1	0.2	-0.1
Q	-0.1	-0.1	-0.1	0.4	-0.1	0	0	0	0	0	0	0	0	0	0.1	-0.3	-0.1	0	0	-0.1
S	-0.1	0.2	0.5	0.1	0.2	0	-0.1	-0.3	0	0.2	0.1	0.5	-0.1	-0.1	-0.1	-0.8	-0.7	0.6	0.4	0.1
T	0.2	0.3	-0.1	-0.1	-0.1	0.1	-0.1	0.3	0	-0.1	-0.1	0.1	-0.1	-0.1	0	-0.5	-0.2	0.5	0	-0.1
G	-0.3	0.6	0.5	0.3	0.4	0.3	0.2	0.1	0	0.2	0.2	0	0	0.1	-0.1	-0.7	-0.7	-0.7	-0.1	-0.2
P	-0.3	-0.1	-0.2	-0.3	-0.3	0	0.2	-0.1	0	0.2	0.2	-0.1	0	0	0	0.5	-0.1	-0.1	0.1	0.1
C	0.2	-0.2	0.7	-0.1	0.7	-0.1	-0.1	-0.4	0	-0.1	-0.1	0.1	-0.1	-0.1	-0.1	0.6	-0.7	0.3	-0.1	-0.8

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0044	-0.3	0.4	1.6	2	1.5	0.4	-0.2	0.1	-1	-0.7	-0.9	-0.1	-0.3	-0.6	-0.6	0.3	0.3	0	-0.2	-0.7
0045	1.4	0.7	1.1	1.3	1.7	0.2	-1.2	0.1	-0.8	-0.4	-0.3	-0.3	-0.6	-0.7	-0.6	-0.7	-0.1	0.5	-0.7	0.4

Select residue pair below:

i_j	Score	Prob
0044_0088	1.881	1.00
0044_0086	1.578	1.00
0044_0058	1.540	1.00
0044_0095	0.729	0.65
0044_0094	0.714	0.63
0044_0047	0.623	0.48
0035_0044	0.561	0.37

Local Interactions:

i_j	Score	Prob
0042_0044	0.955	0.90
0043_0044	0.812	0.77
0044_0045	0.800	0.75
0044_0046	0.596	0.43

See all coupling residues
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