May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

GREMLIN_4ote Return to Main Page

Instructions
  • Use the menu to the right to browse the coupling matrix.

Coupling matrix for [R:0119] and [G:0134]
- A F I L V M W Y D E K R H N Q S T G P C
A 0.1 0 -0.1 -0.1 0.2 -0.1 0 0 0.6 0.7 0.2 -0.1 -0.1 -0.7 -0.2 -0.3 -0.2 0.7 0 0
F -0.2 0 -0.1 -0.3 0.2 0 0.2 0 -0.5 -0.1 -0.4 0.2 0 0.2 -0.1 -0.2 0.3 0.3 -0.2 0
I -0.4 0 -0.1 -0.4 -0.2 -0.1 0 -0.1 0.2 -0.4 0.3 -0.1 -0.1 1.2 0.1 -0.1 0 0.1 -0.3 0
L -0.1 -0.2 -0.4 -1 0.1 -0.2 -0.2 0.1 -0.1 -0.4 0.3 -0.1 0.1 0.8 -0.2 0.9 0 0.8 -0.1 -0.1
V 0.2 0 -0.1 -0.2 -0.1 0 0 0 0.3 -0.2 0 -0.1 -0.1 0.1 0.2 0.1 0.1 0.2 -0.3 0
M -0.2 0 -0.1 -0.2 -0.1 0 0 0 -0.5 0.1 -0.2 -0.1 0 0.2 -0.1 0.4 0.5 0.2 -0.2 0
W -0.2 0 0 -0.1 -0.1 0 0 0 0.4 1 0.3 0 0 -0.3 -0.1 -0.2 -0.2 -0.6 0.3 0
Y 0.4 0 0.3 -0.3 -0.2 0 0 0 -0.8 0.1 -0.1 0.3 0.4 -0.5 -0.1 -0.1 0.5 0 0.2 0
D 0.5 0.3 -0.1 -0.3 -0.1 0 0 0 -0.1 0.5 0.2 -0.1 0 -0.7 -0.1 -0.4 -0.2 -0.1 0.2 0
E -0.2 0 -0.1 0 -0.1 0 0 0 0.6 -0.3 -0.4 -0.1 0 -0.3 -0.1 0.5 -0.3 0.1 -0.1 0
K 0.4 -0.1 0.1 0.9 0.5 -0.1 -0.1 -0.1 -0.8 0.2 -0.2 -0.2 -0.2 -0.4 0.7 -0.3 -0.1 -0.1 0.4 -0.1
R 0.1 -0.1 -0.1 1.2 0.1 -0.1 -0.1 -0.1 0.4 -0.1 -0.6 -0.1 -0.2 0 0.2 0.6 0.1 0.1 -0.5 -0.1
H -0.2 0 0.8 0.2 -0.1 0 0 0 -0.5 -0.4 -0.3 0 0 -0.3 -0.1 0.1 -0.2 0.3 -0.2 0
N 0.1 -0.1 0 1 0.3 0.4 -0.1 -0.1 -0.3 -0.1 0.2 0 -0.1 -0.2 0.4 -0.7 0.1 -0.2 0.4 -0.1
Q -0.1 0 -0.1 0.1 -0.2 -0.1 0 -0.1 0.1 -0.5 -0.1 0.3 -0.1 0.7 -0.2 0.3 -0.3 0.6 -0.4 0
S -0.1 0 0.1 0 -0.2 0.2 0 0 0.9 0.2 0.9 -0.1 0 0.3 -0.1 0.5 -0.4 -1.1 0.5 0
T 0.3 0 -0.1 -0.2 -0.2 0 0 0 0.8 0.5 0.1 -0.1 -0.1 0.5 -0.1 -0.1 0 -1.2 0 0
G -0.2 0 -0.1 -0.2 0.3 -0.1 0 0 0.6 -0.1 0.4 -0.1 0 0.3 -0.1 -0.3 0.9 -0.5 0.4 0
P -0.1 0 0 -0.3 0 0 0 0 -0.3 -0.1 -0.1 0 0 -0.1 0 -0.1 -0.1 1 0 0
C 0 0 0 0 0 0 0 0 -0.1 0 0 0.2 0 -0.1 0 -0.1 -0.1 -0.1 0 0

Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0119 0.1 -0.2 -0.3 0.6 0.8 -0.3 -0.3 0 0.3 -0.4 1.2 1.4 -0.1 0.9 0.1 0.1 0 -0.1 -1.2 -1.2
0134 0.3 -1.2 -0.5 -0.5 -0.1 -0.9 -1.2 -1.3 1.4 0.7 0.8 -0.5 -1.1 1.2 -0.1 0.8 1 0.8 0.2 -1.3
Select residue pair below:
i_j Score Prob
0131_0134 0.868 0.83
0119_0134 0.685 0.58
Local Interactions:
i_j Score Prob
0133_0134 1.699 1.00
0132_0134 0.961 0.90
0134_0135 0.499 0.28
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: K D D K K ...

Page generated in 0.0134 seconds.