May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
GREMLIN_4ote Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [V:0083] and [A:0197]
- A F I L V M W Y D E K R H N Q S T G P C
A -0.5 -0.2 -0.5 0 -0.4 -0.1 -0.1 0.2 0 -0.1 0.2 -0.3 -0.1 -0.1 -0.1 -0.3 0.2 0.3 2.3 0
F -0.1 -0.3 1 -0.1 -0.1 0.1 -0.1 0.2 0 0.4 -0.2 -0.2 -0.1 -0.1 0.4 -0.3 -0.1 0.4 -0.3 0
I 0.1 0.2 1.2 0.4 0.9 -0.1 0.9 0.2 0.1 -0.5 -0.2 -0.6 -0.3 -0.1 -0.4 0.1 -0.3 -0.5 -0.6 -0.1
L 0 0.8 0.2 -0.2 0.2 0.1 -0.2 0.9 -0.2 -0.2 -0.6 -0.3 0.5 0.4 -0.4 0.1 0.7 0.4 -0.6 -0.1
V -0.1 -0.1 0.1 0.3 0.2 -0.4 0.1 -0.8 -0.2 -0.3 0.7 0.3 0.3 0.7 -0.3 -0.5 0.3 0.4 -0.8 -0.1
M -0.3 0.3 0.5 -0.1 -0.2 -0.1 0 -0.1 0 -0.1 -0.1 -0.1 0 -0.1 -0.1 -0.1 -0.2 0.2 0.7 0
W -0.4 0 -0.3 0 0.5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Y 0.4 -0.4 -0.3 -0.3 0.4 0.8 -0.3 -0.4 0.3 -0.3 -0.3 0 -0.1 -0.2 0.1 0.1 0.1 0.8 0.2 0
D -0.1 -0.1 -0.2 -0.1 -0.4 0 0 -0.1 0 0 -0.1 -0.1 0 0 0 0.8 0.2 -0.2 -0.1 0
E 0 0 -0.2 0 -0.4 0 0 0 0 0 0 -0.1 0 0 0 0 0.4 -0.1 0 0
K 0.3 0 -0.2 0 -0.1 0 0 0 0 0 0 -0.1 0 0 0 0 0 -0.1 0 0
R 0.3 0 0 -0.1 0 0 0 0 0 0 -0.1 -0.1 0 0 0 -0.1 -0.1 -0.1 -0.1 0
H 1.4 -0.1 -0.3 -0.1 -0.3 -0.1 0 -0.1 0 0 -0.1 -0.1 0 0 0 -0.1 -0.2 -0.1 -0.1 0
N -0.2 -0.2 0.3 -0.1 1.5 -0.1 -0.1 -0.2 0 -0.1 -0.1 0 -0.1 -0.2 -0.1 -0.1 0.4 -0.4 0.1 0
Q 0.5 -0.1 -0.3 -0.1 -0.3 0 0 -0.1 0 0 -0.1 -0.1 0 0 0 0.4 -0.1 -0.1 -0.1 0
S -0.1 -0.1 -0.2 0.4 -0.2 -0.1 -0.1 -0.2 0 0.9 0 0.9 -0.1 -0.1 0.3 -0.1 -0.1 -0.2 -0.1 0
T -0.6 0.4 0.4 0.3 0.2 0.3 -0.2 0.4 -0.2 0.3 1.2 0.5 -0.2 -0.4 0.7 0.2 -0.8 -0.8 -0.4 -0.1
G 0.6 -0.1 -0.3 -0.1 -0.7 -0.1 0 -0.1 0 0 -0.1 0.7 0 -0.1 0 -0.1 -0.1 0.3 -0.1 0
P -0.2 0 -0.1 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
C 0 0 -0.1 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0083 0.9 0.3 1.4 2 0.8 0.3 -1.1 0.9 -0.3 -0.6 -1 -0.8 -0.6 0.4 -0.5 0.6 1.2 -0.5 -1.2 -1.1
0197 1.8 -0.3 1.4 0.2 1.3 -0.1 -0.8 -0.2 -1 -0.5 0.2 0.7 -1 -0.6 -0.4 -0.1 0.4 0.3 0.1 -1.3
Select residue pair below:
i_j Score Prob
0079_0197 1.261 0.99
0197_0239 0.876 0.84
0062_0197 0.533 0.33
0083_0197 0.497 0.28
Local Interactions:
i_j Score Prob
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: K D D K K ...
Page generated in 0.0139 seconds.