May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
India-Argentina Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [A:0233] and [G:0237]
- A F I L V M W Y D E K R H N Q S T G P C
A -0.6 -0.1 0.5 -0.1 0.4 -0.1 0 -0.2 -0.3 -0.2 0.8 0.1 -0.1 -0.3 0.3 -0.1 0.1 0.6 -0.1 -0.1
F 1 0 -0.6 -0.5 -0.1 0.4 0 -0.1 -0.3 0.6 -0.1 0.1 -0.1 -0.3 -0.5 0.1 0.3 0.2 -0.1 -0.1
I -0.3 -0.2 -0.4 0.1 -0.6 0.3 0.1 -0.3 0.1 0.2 0.8 0.6 0.1 0.5 0.6 -0.2 -0.3 -0.3 -0.3 -0.2
L 0.5 -0.4 -0.2 -0.5 -0.2 -0.7 -0.3 0.3 0.7 0.4 0 0.3 0 0.1 0.5 0 0.5 0.6 0.1 -0.5
V 0 0.5 0.1 0.2 0.1 0.3 -0.1 -0.5 0.4 -0.3 0.6 0.5 0 0 0.1 -0.4 -0.3 -0.1 -0.1 -0.2
M 0.2 -0.1 0.7 0.5 -0.2 -0.3 -0.1 0.2 -0.2 -0.6 -0.3 0.1 0.3 0.2 0 0.4 0.3 -0.4 0.2 -0.1
W 0.7 0 -0.3 -0.7 0.1 0.1 0 -0.1 -0.1 0.9 0 -0.3 0 -0.1 -0.1 0.5 -0.1 -0.1 0 0
Y 0 0 -0.3 -0.1 0.1 -0.1 0 -0.1 0.1 0.5 -0.2 0.3 0 0.1 0.6 -0.2 -0.1 -0.1 0 0
D -0.1 0 0.3 -0.1 -0.1 -0.1 0 0 0 -0.2 0.3 -0.1 0 0 -0.1 -0.1 0 0 0 0
E -0.1 0 0.4 -0.2 0 0 0 0 0 -0.1 -0.1 -0.1 0 0 0 -0.1 0 0 0 0
K -0.1 0 -0.1 -0.2 -0.1 -0.1 0 0 0 -0.1 -0.1 -0.1 0 0.4 0 -0.1 0 0 0 0
R -0.1 0 -0.1 -0.2 0.4 -0.1 0 0 0 -0.1 -0.1 -0.2 0 0 -0.1 0.4 0 0 0 0
H -0.2 0 -0.2 1.1 -0.1 -0.1 0 0 -0.1 -0.3 -0.2 -0.1 0 0 -0.1 0.3 0 0 0 0
N -0.2 0 -0.1 0.1 0.3 -0.1 0 0 0 -0.2 0.1 0.2 0 0 -0.1 -0.1 0 0 0 0
Q -0.1 0 0.1 0.7 -0.2 0.1 0 0.8 -0.1 -0.3 -0.4 -0.2 0 -0.1 -0.2 -0.2 0 -0.1 0 0
S -0.3 0 0.1 0.7 -0.1 -0.1 0 0 0 0.1 -0.2 -0.1 0 0 -0.1 -0.1 0 -0.1 0 0
T 0.2 0 0.1 0.1 0.1 0.6 0 -0.1 -0.1 0.5 -0.2 -0.5 -0.1 -0.1 -0.3 -0.3 -0.1 -0.1 0 0
G 0.2 0 -0.1 -0.2 0 -0.1 0 0 0 -0.2 -0.1 0.3 0 0 -0.1 -0.1 0 0 0 0
P -0.1 0 0 -0.1 0 0 0 0 0 -0.1 -0.1 0 0 0 0 0 0 0 0 0
C -0.2 -0.1 0.7 0.3 0.5 0.4 -0.1 -0.1 -0.3 -0.2 -0.4 -0.5 -0.1 -0.3 0 0.3 -0.2 -0.2 -0.1 1
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0233 0.5 1.3 0.9 2.8 0.7 1.2 0.3 0.4 -0.7 -0.9 -0.9 -0.7 -0.4 -0.7 -0.6 -0.6 0.1 -0.8 -1.1 0.1
0237 0.6 -1 0.7 1.4 0.6 0.5 -1.2 -0.7 -0.4 0.9 0.5 0.5 -0.6 0 0.1 0.7 -0.4 -0.5 -1 -0.8
Select residue pair below:
i_j Score Prob
0237_0260 1.874 1.00
0237_0263 1.358 0.99
0233_0237 0.932 0.88
0234_0237 0.879 0.84
0237_0259 0.841 0.80
0237_0256 0.811 0.77
Local Interactions:
i_j Score Prob
0237_0238 0.634 0.49
0236_0237 0.543 0.34
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: M E L P N ...
Page generated in 0.0154 seconds.