OPENSEQ.org -1515595952- GREMLIN Submission

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India-Argentina

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Coupling matrix for [N:0110] and [G:0200]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.6	-0.1	-0.2	-0.2	-0.1	0.3	0.3	-0.1	0	0.5	-0.6	0.3	0.3	-0.2	0.1	0.2	-0.4	0	0	-0.1
F	0.1	0	0	-0.1	0	0	0	0	-0.1	-0.1	0.4	-0.2	-0.1	0.3	0.1	-0.3	-0.2	-0.2	0	0
I	0.1	0	-0.1	0	-0.1	0	-0.1	0.3	0.3	-0.1	0.2	0.4	-0.2	-0.3	-0.5	-0.3	-0.1	0.6	-0.2	0
L	0	0	-0.1	0.1	0.2	-0.1	0	0	-0.1	0.3	-0.5	-0.1	-0.2	-0.1	0.2	0.5	0.7	-0.3	-0.2	0
V	-0.7	0	0.3	-0.4	-0.3	-0.1	-0.1	0	0.3	-0.2	-0.4	0.8	0.6	-0.1	-0.2	-0.2	0.6	0.7	-0.2	0
M	-0.1	0	0	0.4	0	0	0	0	-0.3	0.2	-0.3	-0.1	0	-0.1	0.4	-0.2	-0.1	-0.1	0	0
W	0.4	0	0	0	0	0	0	0	-0.3	0.2	0	-0.1	-0.1	0.3	-0.2	-0.2	-0.2	-0.2	-0.1	0
Y	-0.2	0	0.4	0.3	0	0	0	0	-0.1	0.1	-0.2	-0.2	-0.1	-0.1	0.1	0.1	-0.2	-0.2	-0.1	0
D	0.3	-0.2	-0.4	-0.1	-0.2	-0.2	0.1	-0.1	0.1	0.1	0.2	0.2	-0.1	0.1	0.2	-0.4	0.1	-0.1	0.4	-0.2
E	-0.3	0	-0.1	-0.2	-0.1	0	-0.1	0	-0.1	-0.6	0.1	-0.1	0.7	0.3	0	-0.2	0.4	-0.5	0.4	0
K	-0.3	-0.1	-0.1	0	-0.1	0.1	-0.1	-0.1	-0.3	-0.2	0.4	-0.6	0.1	0.3	0.5	0.6	-0.2	0.5	-0.3	-0.1
R	-0.1	0	-0.1	-0.2	0.1	0	0	0	0.8	0.1	0.2	0.1	-0.2	-0.5	-0.5	0.5	0.3	-0.2	-0.2	0
H	0.6	0	0.1	-0.2	-0.1	0	0	0.2	-0.4	-0.1	0.5	0.1	-0.3	-0.1	0.3	-0.1	-0.2	0.1	0.1	0
N	-0.1	-0.1	0.2	0.3	0.2	-0.1	-0.1	-0.1	0.2	0.5	0	-0.7	-0.4	0.6	-0.1	0.2	-0.3	0.1	-0.3	-0.1
Q	0.3	0	-0.1	-0.2	0.2	0	0	0	0.6	-0.1	-0.3	-0.3	-0.2	0.2	0.5	-0.4	0	-0.1	-0.2	0
S	-0.5	-0.1	-0.2	-0.1	-0.1	-0.1	-0.1	-0.1	0.4	0	-0.2	0.3	0.3	0.5	-0.1	0	0.5	-0.2	0	-0.1
T	0	0	-0.1	0.2	0.2	0	0	0	-0.3	0.2	0.4	-0.5	-0.3	0.1	0.2	0.3	0.1	-0.1	-0.2	0
G	0.3	-0.2	0.3	0.3	-0.3	-0.1	-0.2	-0.1	0.2	0.2	0.1	-0.3	0.4	-0.8	-0.1	0	0.2	0.2	0.1	0
P	-0.5	0.1	-0.3	0.3	0.3	-0.1	-0.2	-0.2	-0.4	-0.2	0.4	0.7	-0.5	0	-0.1	0.7	0.3	-0.3	0.5	0.2
C	-0.1	0	0	-0.1	0.2	0	0	0	0.1	-0.2	-0.1	-0.1	0	-0.1	-0.1	0.1	-0.1	-0.1	0	0

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0110	0.5	-0.9	0	0.1	0.1	-1	-0.9	-0.8	0.1	-0.3	0.2	0.1	0.1	0.6	0	0.4	-0.3	1.4	1.1	-1.2
0200	0.8	-1.3	-0.8	-0.4	-0.6	-1.2	-1.2	-1.1	1.5	1.6	0.8	0.2	0	0.6	0.8	0.5	0.5	0.5	-0.1	-1.2

Select residue pair below:

i_j	Score	Prob
0106_0110	0.798	0.75
0110_0200	0.711	0.62
0086_0110	0.578	0.40

Local Interactions:

i_j	Score	Prob
0110_0111	1.266	0.99
0110_0112	1.263	0.99
0109_0110	1.029	0.94
0108_0110	0.718	0.64

See all coupling residues
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