OPENSEQ.org -1515595952- GREMLIN Submission

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Coupling matrix for [N:0110] and [L:0111]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.3	-0.2	-0.5	0	-0.6	-0.2	-0.1	-0.2	0.5	0.1	-0.2	-0.8	0.1	-0.3	0	0.1	0.2	0.6	0.6	0.2
F	-0.3	0	-0.1	-0.1	-0.1	0	0	0	-0.1	-0.2	-0.4	0.5	0	-0.1	-0.2	0.7	-0.1	0.2	-0.1	0
I	-0.1	-0.1	-0.2	-0.1	-0.3	-0.1	-0.1	0	0.6	0	0.3	0.1	0	0.3	-0.5	0.1	0.5	0.1	0	-0.1
L	-0.2	-0.1	-0.3	-0.4	-0.3	-0.1	-0.1	-0.1	0.5	0.7	-0.2	0.5	-0.2	0.4	-0.2	-0.1	-0.1	-0.4	0.8	-0.1
V	-0.7	-0.1	-0.3	-0.5	-0.3	-0.1	-0.1	-0.1	0	1.2	-0.2	0.8	0.1	0.1	-0.1	0.1	0.1	0.4	0.3	-0.1
M	-0.2	0	-0.1	-0.1	-0.1	0	0	0	0.3	-0.1	0.3	-0.2	0	-0.1	-0.1	0.2	-0.1	-0.2	-0.1	0
W	0.1	0	-0.1	-0.1	-0.1	0	0	0	0.3	0.5	0	-0.2	0	-0.1	-0.2	0.2	-0.1	-0.3	-0.1	0
Y	0.4	0	-0.1	-0.2	0.3	0	0	0	0.2	-0.2	-0.1	-0.2	0	0.3	0.2	-0.3	-0.1	-0.2	-0.1	-0.1
D	-0.2	0.1	0.6	-0.1	-0.1	0.6	0.3	0.3	-0.8	0.4	0.5	0.1	-0.1	-0.1	0.4	-0.1	-0.6	-0.4	0	0.1
E	-0.3	-0.1	-0.3	-0.3	-0.1	0.2	-0.1	0.2	-0.4	0.1	-0.3	0	0.1	0	0.3	0.3	0.5	-0.1	-0.1	-0.1
K	0.3	-0.2	0.2	0.6	0	0.1	-0.1	0.2	-0.1	-0.8	0.2	-0.8	-0.3	0	0.1	-0.3	0.5	0.6	0.4	0
R	0.2	-0.1	-0.1	-0.1	-0.4	0	-0.1	-0.1	0.1	0.6	-0.4	0.6	-0.1	0.2	0.3	-0.2	-0.5	0.1	0.1	-0.1
H	0	-0.1	0.5	-0.1	0.1	-0.2	-0.1	-0.1	-0.5	0	0.1	-0.2	0.2	-0.4	0.7	0.2	-0.4	-0.3	0	0.4
N	-0.1	0.1	0.4	0.5	0.1	-0.2	-0.1	0.2	-0.1	-0.5	0.6	0.2	-0.3	0.1	0.4	-0.1	-0.2	-0.7	0	0.2
Q	0	-0.1	0.1	0.1	0.3	0.2	-0.1	-0.1	-0.1	0	-0.3	-0.5	-0.1	0.6	-0.3	0.1	0.5	-0.1	-0.2	-0.1
S	0.5	0.3	0	0.2	0.3	0.2	-0.1	-0.1	-0.4	-0.4	-0.3	0.1	0	0	-0.2	0.1	-0.6	0.5	0.1	0
T	0.4	-0.1	0.1	-0.5	0.7	-0.2	-0.1	-0.1	0.4	-0.5	0	-0.1	-0.2	-0.3	-0.2	-0.2	0.5	0.1	0.2	-0.1
G	-0.1	0.6	0.6	0.1	0.8	-0.2	0.3	0.3	-0.1	-0.4	0.7	0.4	-0.2	0	-0.5	-0.5	0	-0.7	-0.7	0
P	0.7	-0.2	0	0.8	-0.1	0	0.2	-0.2	-0.5	0.2	-0.1	-0.4	0.3	-0.1	-0.3	0.3	0.7	0.4	-0.6	-0.3
C	-0.1	0	-0.1	-0.1	0	0	0	0	-0.1	-0.1	-0.2	-0.1	0	0	-0.1	0.4	-0.1	-0.1	0	0

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0110	0.5	-0.9	0	0.1	0.1	-1	-0.9	-0.8	0.1	-0.3	0.2	0.1	0.1	0.6	0	0.4	-0.3	1.4	1.1	-1.2
0111	0.9	-0.9	0.4	-0.6	0.4	-0.5	-0.7	-0.8	0.1	0.2	0.2	0.6	-0.3	0.4	-0.3	0.5	0.2	0.7	0.4	-0.9

Select residue pair below:

i_j	Score	Prob
0106_0110	0.798	0.75
0110_0200	0.711	0.62
0086_0110	0.578	0.40

Local Interactions:

i_j	Score	Prob
0110_0111	1.266	0.99
0110_0112	1.263	0.99
0109_0110	1.029	0.94
0108_0110	0.718	0.64

See all coupling residues
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