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OPENSEQ.org
TATE - Sec-independent protein translocase protein TatE
UniProt: P0A843 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG11305
Length: 67 (66)
Sequences: 206
Seq/Len: 3.12
TATE
Paralog alert: 0.66 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: TATA TATE
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
4_I 9_L 2.059 1.00
53_G 56_V 1.738 0.99
22_T 29_G 1.715 0.99
8_K 11_V 1.611 0.98
5_S 10_L 1.558 0.97
4_I 8_K 1.55 0.97
13_A 35_A 1.546 0.97
2_G 23_K 1.534 0.97
41_K 46_D 1.418 0.94
29_G 35_A 1.411 0.94
24_K 42_A 1.385 0.93
9_L 42_A 1.341 0.91
3_E 9_L 1.336 0.91
26_R 29_G 1.315 0.90
28_L 43_M 1.303 0.90
29_G 33_G 1.299 0.90
37_K 40_K 1.238 0.86
16_V 36_I 1.227 0.86
1_M 56_V 1.215 0.85
34_A 45_D 1.212 0.85
44_N 52_K 1.2 0.84
47_D 57_D 1.172 0.82
47_D 50_A 1.153 0.81
22_T 35_A 1.15 0.80
57_D 60_A 1.102 0.76
26_R 35_A 1.091 0.75
2_G 6_I 1.063 0.73
10_L 17_V 1.052 0.71
13_A 26_R 1.049 0.71
29_G 38_G 1.048 0.71
18_L 42_A 1.047 0.71
14_A 17_V 1.039 0.70
22_T 25_L 1.034 0.70
30_G 35_A 1.031 0.69
2_G 13_A 1.013 0.67
23_K 36_I 1.011 0.67
8_K 42_A 1.01 0.67
2_G 7_T 1.007 0.67
26_R 34_A 1.002 0.66
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
2l16A1199.50.416Contact Map0.134
2lzrA10.820999.30.46Contact Map0.112
4fu6A117.70.903Contact Map0.045
3j0cA40.4037.70.903Contact Map0.122
3ar4A10.53737.20.904Contact Map0.363
1skhA10.44786.80.906Contact Map0.084
3j0fE40.35824.80.912Contact Map0.003
3g6mA10.65674.20.915Contact Map0.018
3qhoA30.37314.20.915Contact Map
3o6cA10.47764.20.915Contact Map0.206
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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