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OPENSEQ.org
RUTE - RUTR
UniProt: P75894 - P0ACU2
Length: 408
Sequences: 586
Seq/Len: 1.50
I_Prob: 0.00
RUTE - Probable malonic semialdehyde reductase RutE
Paralog alert: 0.79 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: NFNB RUTE YDJA 		RUTR - HTH-type transcriptional regulator RutR
Paralog alert: 0.77 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: ACRR BDCR BETI COMR ENVR NEMR RUTR SLMA UIDR YBIH YBJK YJDC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
65_R 41_L 0.94 0.00
157_A 100_L 0.91 0.00
28_V 109_P 0.89 0.00
29_S 46_E 0.86 0.00
85_A 115_F 0.82 0.00
64_E 114_L 0.82 0.00
43_G 26_A 0.82 0.00
144_G 89_A 0.81 0.00
98_P 44_I 0.78 0.00
26_T 203_R 0.78 0.00
192_A 167_W 0.78 0.00
33_L 173_Y 0.76 0.00
168_L 128_D 0.75 0.00
86_I 145_I 0.75 0.00
55_V 26_A 0.75 0.00
33_L 163_I 0.73 0.00
49_C 63_E 0.72 0.00
65_R 34_F 0.71 0.00
149_F 43_Q 0.71 0.00
65_R 92_A 0.71 0.00
63_K 20_K 0.71 0.00
45_T 18_A 0.70 0.00
40_M 161_H 0.70 0.00
49_C 65_L 0.70 0.00
133_I 22_A 0.69 0.00
10_L 127_M 0.69 0.00
35_E 204_I 0.69 0.00
37_Y 128_D 0.69 0.00
66_L 44_I 0.69 0.00
193_C 77_W 0.69 0.00
140_G 163_I 0.69 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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