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OPENSEQ.org

MNMA - SERC
UniProt: P25745 - P23721
Length: 730
Sequences: 471
Seq/Len: 0.68
I_Prob: 0.00

MNMA - tRNA-specific 2-thiouridylase MnmA
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: MNMA
SERC - Phosphoserine aminotransferase
Paralog alert: 0.94 [within 20: 0.15] - ratio of genomes with paralogs
Cluster includes: AAT ALAA ALAC ARNB AVTA CSDA HIS8 ISCS MALY RFFA SERC SUFS TYRB YBDL YDCR YJIR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
177_Q 166_G 1.22 0.00
287_L 196_A 1.17 0.00
268_N 61_L 1.17 0.00
31_Q 334_M 1.16 0.00
63_D 201_G 1.11 0.00
131_R 92_T 1.08 0.00
292_L 146_M 1.07 0.00
294_W 320_A 1.05 0.00
31_Q 79_Q 1.05 0.00
161_E 354_M 1.04 0.00
319_C 269_N 1.02 0.00
231_E 346_G 1.01 0.00
342_P 195_G 0.98 0.00
330_E 158_A 0.97 0.00
326_D 347_V 0.96 0.00
355_L 302_F 0.95 0.00
106_I 141_D 0.95 0.00
100_I 302_F 0.94 0.00
201_I 181_S 0.94 0.00
62_C 334_M 0.93 0.00
327_D 358_E 0.93 0.00
287_L 192_I 0.92 0.00
62_C 336_A 0.92 0.00
190_A 195_G 0.91 0.00
33_E 4_I 0.90 0.00
21_S 148_Y 0.90 0.00
294_W 249_S 0.90 0.00
37_M 77_R 0.89 0.00
158_L 337_S 0.89 0.00
61_V 211_R 0.89 0.00
318_P 59_D 0.89 0.00
125_A 96_Y 0.88 0.00
131_R 247_Y 0.88 0.00
218_P 201_G 0.88 0.00
108_F 269_N 0.87 0.00
69_L 315_E 0.87 0.00
221_I 32_L 0.86 0.00
329_I 302_F 0.86 0.00
165_Q 59_D 0.86 0.00
310_T 44_K 0.86 0.00
306_C 289_D 0.86 0.00
354_C 61_L 0.86 0.00
164_A 274_E 0.86 0.00
62_C 79_Q 0.85 0.00
336_P 120_D 0.85 0.00
287_L 211_R 0.85 0.00
184_D 161_E 0.85 0.00
210_L 70_L 0.84 0.00
49_C 9_S 0.84 0.00
287_L 249_S 0.84 0.00
248_I 60_L 0.84 0.00
170_V 243_T 0.84 0.00
263_D 288_N 0.83 0.00
237_Y 132_K 0.83 0.00
193_K 77_R 0.82 0.00
340_V 190_G 0.82 0.00
145_L 20_K 0.82 0.00
76_A 74_G 0.82 0.00
201_I 354_M 0.82 0.00
212_R 278_G 0.82 0.00
41_E 82_A 0.82 0.00
198_I 299_N 0.81 0.00
238_H 189_Y 0.81 0.00
330_E 352_D 0.81 0.00
263_D 94_A 0.81 0.00
227_D 137_W 0.81 0.00
187_L 210_V 0.81 0.00
294_W 307_S 0.81 0.00
65_L 142_N 0.81 0.00
132_R 137_W 0.81 0.00
221_I 117_N 0.80 0.00
197_G 148_Y 0.80 0.00
80_D 270_Q 0.80 0.00
335_E 135_R 0.80 0.00
313_R 181_S 0.80 0.00
240_L 352_D 0.80 0.00
131_R 196_A 0.79 0.00
131_R 308_A 0.79 0.00
317_I 250_G 0.79 0.00
238_H 20_K 0.79 0.00
65_L 92_T 0.79 0.00
273_V 47_I 0.79 0.00
170_V 13_M 0.78 0.00
228_E 20_K 0.78 0.00
31_Q 116_P 0.78 0.00
363_R 350_L 0.78 0.00
165_Q 354_M 0.78 0.00
244_K 68_K 0.78 0.00
8_V 44_K 0.78 0.00
61_V 232_N 0.77 0.00
197_G 342_M 0.77 0.00
178_V 189_Y 0.77 0.00
91_K 295_R 0.77 0.00
249_G 199_N 0.77 0.00
260_Y 47_I 0.77 0.00
280_P 185_D 0.76 0.00
124_I 187_S 0.75 0.00
83_F 199_N 0.75 0.00
47_E 47_I 0.75 0.00
77_E 341_A 0.75 0.00
352_E 79_Q 0.75 0.00
163_I 79_Q 0.75 0.00
172_E 182_R 0.75 0.00
238_H 246_W 0.75 0.00
83_F 196_A 0.75 0.00
80_D 302_F 0.75 0.00
62_C 51_E 0.74 0.00
318_P 21_Q 0.74 0.00
92_A 196_A 0.74 0.00
348_F 350_L 0.74 0.00
265_D 199_N 0.74 0.00
166_S 295_R 0.74 0.00
331_V 111_K 0.74 0.00
160_H 164_D 0.74 0.00
296_D 158_A 0.74 0.00
363_R 158_A 0.74 0.00
178_V 40_S 0.74 0.00
166_S 337_S 0.74 0.00
61_V 95_D 0.74 0.00
353_V 194_A 0.74 0.00
7_K 316_E 0.74 0.00
248_I 182_R 0.74 0.00
212_R 56_D 0.74 0.00
19_S 196_A 0.74 0.00
265_D 179_I 0.73 0.00
214_L 120_D 0.73 0.00
31_Q 169_V 0.73 0.00
286_G 135_R 0.73 0.00
83_F 134_M 0.73 0.00
63_D 47_I 0.73 0.00
351_G 132_K 0.73 0.00
294_W 277_Y 0.73 0.00
292_L 324_A 0.73 0.00
315_T 57_F 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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