May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
NUOJ - NUON
UniProt: P0AFE0 - P0AFF0
Length: 669
Sequences: 1057
Seq/Len: 1.81
I_Prob: 0.02
NUOJ - NADH-quinone oxidoreductase subunit J
Paralog alert: 0.06 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NUOJ 		NUON - NADH-quinone oxidoreductase subunit N
Paralog alert: 0.84 [within 20: 0.59] - ratio of genomes with paralogs
Cluster includes: HYCC HYFB HYFD HYFF NUOL NUOM NUON
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3rkoND:MC:LB:JFContact Map
4he8LF:MG:NI:JDContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
58_V 382_S 1.23 0.02
129_V 326_V 1.13 0.01
153_V 147_F 1.07 0.01
25_P 247_K 1.06 0.01
32_L 82_L 1.01 0.01
99_L 89_T 0.99 0.01
118_G 203_L 0.97 0.01
37_L 146_A 0.97 0.01
98_I 462_L 0.97 0.01
74_L 247_K 0.95 0.01
141_V 388_M 0.94 0.01
21_T 296_R 0.94 0.01
154_V 149_Q 0.93 0.01
28_A 328_V 0.93 0.01
156_F 224_H 0.92 0.01
145_S 74_M 0.92 0.01
33_I 422_L 0.92 0.01
157_H 105_F 0.91 0.01
129_V 126_A 0.91 0.01
35_S 303_I 0.91 0.01
129_V 69_V 0.90 0.01
7_I 416_V 0.88 0.01
52_G 228_P 0.88 0.01
57_I 67_M 0.88 0.01
58_V 242_L 0.87 0.01
96_P 69_V 0.87 0.01
71_V 137_L 0.87 0.01
45_S 228_P 0.86 0.01
98_I 89_T 0.86 0.01
70_V 247_K 0.86 0.01
155_A 140_F 0.86 0.01
57_I 175_A 0.84 0.01
123_P 126_A 0.84 0.01
54_L 161_I 0.84 0.01
28_A 126_A 0.84 0.01
22_H 381_L 0.83 0.01
38_A 205_A 0.82 0.01
102_I 282_I 0.82 0.01
3_F 369_R 0.82 0.01
47_G 146_A 0.82 0.01
7_I 261_A 0.82 0.01
71_V 291_Q 0.82 0.01
105_V 188_A 0.81 0.01
28_A 285_N 0.81 0.01
33_I 297_L 0.80 0.01
10_L 203_L 0.80 0.01
12_A 287_M 0.80 0.01
167_V 389_T 0.80 0.01
19_V 312_A 0.80 0.01
29_L 114_L 0.80 0.01
9_G 151_R 0.79 0.01
71_V 386_I 0.79 0.01
128_A 177_V 0.79 0.01
66_L 229_D 0.79 0.01
57_I 310_L 0.78 0.01
146_M 390_L 0.78 0.01
153_V 373_A 0.78 0.01
32_L 294_I 0.78 0.01
98_I 126_A 0.78 0.01
15_A 185_S 0.78 0.01
70_V 463_L 0.78 0.00
117_Q 208_G 0.78 0.00
13_I 272_V 0.77 0.00
36_L 291_Q 0.77 0.00
74_L 121_N 0.77 0.00
39_I 210_M 0.76 0.00
79_S 107_L 0.76 0.00
54_L 387_P 0.76 0.00
137_Y 362_Y 0.75 0.00
157_H 429_A 0.75 0.00
13_I 185_S 0.75 0.00
42_V 330_L 0.75 0.00
41_G 285_N 0.74 0.00
20_I 268_A 0.74 0.00
91_Q 262_P 0.74 0.00
56_I 203_L 0.74 0.00
139_L 86_A 0.74 0.00
29_L 177_V 0.74 0.00
11_I 63_V 0.74 0.00
164_A 325_A 0.74 0.00
52_G 273_L 0.73 0.00
79_S 454_G 0.73 0.00
91_Q 185_S 0.73 0.00
26_V 89_T 0.73 0.00
145_S 422_L 0.73 0.00
22_H 368_H 0.73 0.00
22_H 388_M 0.73 0.00
155_A 328_V 0.73 0.00
3_F 276_I 0.72 0.00
143_L 196_G 0.72 0.00
43_F 285_N 0.72 0.00
65_V 291_Q 0.72 0.00
13_I 378_V 0.72 0.00
33_I 123_N 0.72 0.00
143_L 187_V 0.71 0.00
153_V 440_P 0.71 0.00
156_F 156_S 0.71 0.00
72_M 307_G 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 2.8939 seconds.