May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

KDSC - PTSN
UniProt: P0ABZ4 - P69829
Length: 351
Sequences: 199
Seq/Len: 0.60
I_Prob: 0.00

KDSC - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: KDSC
PTSN - Nitrogen regulatory protein
Paralog alert: 0.75 [within 20: 0.20] - ratio of genomes with paralogs
Cluster includes: PTFA PTKA PTMA PTSN SGCA ULAC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
145_A 143_A 1.44 0.00
110_L 71_I 1.39 0.00
178_G 115_D 1.36 0.00
144_D 55_L 1.26 0.00
74_I 15_N 1.22 0.00
31_L 117_T 1.21 0.00
101_N 106_L 1.20 0.00
74_I 107_L 1.19 0.00
120_V 48_Q 1.13 0.00
145_A 129_K 1.12 0.00
15_V 106_L 1.10 0.00
145_A 75_K 1.09 0.00
130_W 75_K 1.08 0.00
56_V 75_K 1.07 0.00
156_V 71_I 1.05 0.00
157_T 38_L 1.05 0.00
30_I 10_L 1.05 0.00
174_L 131_L 1.03 0.00
118_E 84_V 1.03 0.00
113_L 23_V 1.02 0.00
60_Y 116_Q 1.01 0.00
133_M 131_L 1.00 0.00
29_L 143_A 0.99 0.00
146_H 109_A 0.98 0.00
152_R 16_R 0.98 0.00
26_I 79_D 0.97 0.00
174_L 81_L 0.96 0.00
171_D 131_L 0.95 0.00
138_L 51_F 0.95 0.00
132_V 107_L 0.94 0.00
172_L 59_K 0.94 0.00
92_I 71_I 0.93 0.00
173_L 44_S 0.93 0.00
127_L 131_L 0.93 0.00
27_R 127_V 0.93 0.00
168_E 110_L 0.92 0.00
120_V 137_C 0.92 0.00
27_R 148_E 0.92 0.00
142_V 125_S 0.91 0.00
170_C 87_F 0.91 0.00
120_V 14_L 0.91 0.00
85_D 10_L 0.91 0.00
148_L 13_V 0.91 0.00
131_P 139_R 0.91 0.00
142_V 28_K 0.91 0.00
99_Q 74_G 0.90 0.00
171_D 65_I 0.89 0.00
51_L 109_A 0.89 0.00
110_L 43_L 0.88 0.00
22_K 137_C 0.88 0.00
87_C 26_Q 0.88 0.00
113_L 40_A 0.88 0.00
14_P 154_T 0.88 0.00
65_A 128_A 0.87 0.00
130_W 56_T 0.86 0.00
155_Y 18_C 0.86 0.00
94_H 67_N 0.86 0.00
72_V 31_A 0.86 0.00
9_A 8_L 0.85 0.00
137_G 87_F 0.85 0.00
130_W 54_I 0.85 0.00
14_P 10_L 0.85 0.00
26_I 46_P 0.85 0.00
50_E 123_T 0.85 0.00
142_V 97_D 0.85 0.00
122_Y 149_L 0.84 0.00
174_L 106_L 0.84 0.00
178_G 47_P 0.84 0.00
131_P 83_A 0.84 0.00
114_A 139_R 0.84 0.00
23_A 89_Q 0.83 0.00
172_L 150_Y 0.83 0.00
173_L 83_A 0.83 0.00
95_L 62_S 0.83 0.00
91_G 51_F 0.82 0.00
152_R 122_H 0.82 0.00
78_R 140_L 0.82 0.00
82_L 35_I 0.82 0.00
123_V 117_T 0.82 0.00
121_A 143_A 0.82 0.00
155_Y 153_I 0.82 0.00
122_Y 106_L 0.82 0.00
169_V 89_Q 0.82 0.00
139_S 152_I 0.82 0.00
173_L 79_D 0.82 0.00
128_I 83_A 0.81 0.00
56_V 93_P 0.81 0.00
62_I 13_V 0.81 0.00
127_L 106_L 0.81 0.00
73_A 59_K 0.81 0.00
97_Q 27_S 0.81 0.00
87_C 90_L 0.80 0.00
133_M 74_G 0.80 0.00
68_S 122_H 0.80 0.00
21_A 47_P 0.80 0.00
95_L 110_L 0.80 0.00
101_N 119_T 0.80 0.00
183_A 16_R 0.80 0.00
89_T 69_I 0.80 0.00
114_A 129_K 0.80 0.00
130_W 112_V 0.80 0.00
60_Y 60_M 0.80 0.00
132_V 131_L 0.79 0.00
38_S 35_I 0.79 0.00
144_D 80_T 0.79 0.00
143_A 131_L 0.79 0.00
163_R 10_L 0.79 0.00
154_D 86_V 0.79 0.00
110_L 151_Q 0.79 0.00
175_L 49_V 0.79 0.00
123_V 39_A 0.78 0.00
156_V 10_L 0.78 0.00
66_L 153_I 0.78 0.00
68_S 81_L 0.78 0.00
76_T 152_I 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.5864 seconds.