May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

ATPA - ATPF
UniProt: P0ABB0 - P0ABA0
Length: 669
Sequences: 1032
Seq/Len: 1.54
I_Prob: 0.01

ATPA - ATP synthase subunit alpha
Paralog alert: 0.61 [within 20: 0.32] - ratio of genomes with paralogs
Cluster includes: ATPA ATPB FLII
ATPF - ATP synthase subunit b
Paralog alert: 0.13 [within 20: 0.07] - ratio of genomes with paralogs
Cluster includes: ATPF
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
129_V 101_I 1.22 0.01
150_Y 12_I 1.20 0.01
448_L 120_L 1.19 0.01
136_V 13_A 1.17 0.01
266_Q 26_W 1.12 0.00
436_Y 20_F 1.01 0.00
400_Y 108_E 1.00 0.00
3_L 10_Q 1.00 0.00
266_Q 13_A 0.99 0.00
273_I 54_L 0.98 0.00
47_C 86_I 0.97 0.00
264_S 62_T 0.97 0.00
31_I 132_A 0.96 0.00
222_I 76_I 0.94 0.00
244_A 136_I 0.93 0.00
268_V 62_T 0.93 0.00
474_Y 12_I 0.92 0.00
266_Q 25_V 0.91 0.00
362_A 105_A 0.90 0.00
370_P 21_C 0.90 0.00
24_E 20_F 0.89 0.00
172_Q 25_V 0.89 0.00
399_Q 26_W 0.86 0.00
198_I 142_E 0.85 0.00
6_T 54_L 0.83 0.00
379_G 132_A 0.83 0.00
240_Y 135_I 0.82 0.00
194_I 58_K 0.82 0.00
24_E 55_D 0.82 0.00
362_A 18_V 0.82 0.00
132_I 14_F 0.80 0.00
427_V 86_I 0.79 0.00
264_S 16_L 0.79 0.00
151_K 14_F 0.78 0.00
422_D 136_I 0.78 0.00
264_S 67_K 0.78 0.00
38_V 106_Q 0.77 0.00
86_M 14_F 0.77 0.00
153_V 111_A 0.77 0.00
390_S 14_F 0.77 0.00
459_V 110_E 0.76 0.00
184_I 45_A 0.76 0.00
47_C 110_E 0.76 0.00
421_L 108_E 0.75 0.00
259_I 71_E 0.75 0.00
61_A 83_R 0.75 0.00
250_R 104_Q 0.75 0.00
461_L 105_A 0.74 0.00
394_R 68_A 0.74 0.00
150_Y 44_L 0.74 0.00
227_T 61_A 0.74 0.00
250_R 113_R 0.73 0.00
130_E 120_L 0.73 0.00
511_Q 54_L 0.73 0.00
53_I 80_N 0.72 0.00
47_C 87_L 0.72 0.00
146_V 33_I 0.72 0.00
286_F 24_Y 0.72 0.00
213_E 104_Q 0.72 0.00
73_A 97_E 0.71 0.00
95_L 25_V 0.71 0.00
393_I 12_I 0.71 0.00
459_V 113_R 0.71 0.00
196_V 105_A 0.70 0.00
244_A 113_R 0.70 0.00
499_K 88_D 0.70 0.00
102_G 59_A 0.70 0.00
451_A 10_Q 0.70 0.00
223_V 28_P 0.69 0.00
5_S 119_E 0.69 0.00
136_V 3_L 0.69 0.00
41_I 131_G 0.69 0.00
75_V 13_A 0.69 0.00
223_V 138_R 0.69 0.00
94_I 48_E 0.69 0.00
340_F 21_C 0.69 0.00
364_I 98_R 0.68 0.00
55_L 98_R 0.68 0.00
152_A 71_E 0.68 0.00
76_M 98_R 0.68 0.00
223_V 156_L 0.68 0.00
405_A 120_L 0.68 0.00
428_T 78_Q 0.68 0.00
256_A 152_L 0.68 0.00
31_I 14_F 0.68 0.00
329_I 90_A 0.68 0.00
59_R 77_E 0.68 0.00
397_L 72_A 0.68 0.00
364_I 30_M 0.68 0.00
176_T 83_R 0.68 0.00
290_V 123_Q 0.68 0.00
104_L 110_E 0.68 0.00
96_E 97_E 0.67 0.00
104_L 106_Q 0.67 0.00
461_L 16_L 0.67 0.00
82_L 119_E 0.67 0.00
138_E 83_R 0.67 0.00
234_L 131_G 0.66 0.00
455_Y 20_F 0.66 0.00
340_F 25_V 0.66 0.00
431_L 71_E 0.66 0.00
412_D 68_A 0.66 0.00
184_I 103_A 0.66 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.2605 seconds.