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OPENSEQ.org

IF3 - IHFA
UniProt: P0A707 - P0A6X7
Length: 279
Sequences: 182
Seq/Len: 0.69
I_Prob: 0.01

IF3 - Translation initiation factor IF-3
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: IF3
IHFA - Integration host factor subunit alpha
Paralog alert: 0.56 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: DBHA DBHB IHFA IHFB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
74_L 16_L 1.63 0.01
135_M 56_D 1.56 0.01
126_I 32_E 1.51 0.01
73_F 41_G 1.48 0.01
86_K 82_R 1.44 0.01
144_V 59_Q 1.34 0.01
86_K 84_G 1.33 0.01
76_E 84_G 1.27 0.01
103_D 13_F 1.26 0.01
28_G 73_I 1.26 0.01
75_Y 84_G 1.23 0.01
44_E 1_M 1.23 0.01
76_E 82_R 1.23 0.01
75_Y 2_A 1.22 0.01
47_E 7_E 1.20 0.01
165_I 70_D 1.20 0.01
135_M 58_N 1.18 0.00
139_Q 19_S 1.17 0.00
78_S 41_G 1.16 0.00
28_G 88_K 1.16 0.00
63_P 41_G 1.16 0.00
59_N 41_G 1.12 0.00
160_S 15_K 1.08 0.00
84_Q 22_D 1.07 0.00
148_V 9_S 1.04 0.00
153_Q 42_E 1.04 0.00
156_A 33_E 1.03 0.00
170_M 73_I 1.03 0.00
142_M 59_Q 1.02 0.00
30_E 28_E 1.00 0.00
75_Y 15_K 1.00 0.00
83_E 88_K 1.00 0.00
154_E 58_N 0.99 0.00
67_I 74_T 0.98 0.00
120_E 37_A 0.98 0.00
86_K 90_R 0.98 0.00
67_I 82_R 0.96 0.00
50_G 19_S 0.96 0.00
76_E 58_N 0.94 0.00
104_E 32_E 0.94 0.00
87_K 26_L 0.93 0.00
51_V 82_R 0.92 0.00
58_P 41_G 0.92 0.00
107_Y 78_V 0.92 0.00
149_K 93_N 0.91 0.00
161_F 15_K 0.91 0.00
124_A 14_D 0.91 0.00
147_R 30_F 0.91 0.00
127_T 13_F 0.91 0.00
175_A 43_Q 0.90 0.00
156_A 89_S 0.90 0.00
160_S 70_D 0.90 0.00
143_E 2_A 0.90 0.00
109_V 10_E 0.90 0.00
107_Y 12_L 0.90 0.00
60_A 6_A 0.89 0.00
135_M 66_K 0.89 0.00
78_S 28_E 0.89 0.00
80_S 70_D 0.89 0.00
58_P 39_E 0.88 0.00
80_S 41_G 0.88 0.00
37_V 79_V 0.88 0.00
76_E 90_R 0.88 0.00
109_V 82_R 0.88 0.00
154_E 34_I 0.88 0.00
108_Q 8_M 0.88 0.00
75_Y 46_L 0.87 0.00
140_I 7_E 0.86 0.00
93_V 36_R 0.86 0.00
108_Q 1_M 0.86 0.00
74_L 84_G 0.85 0.00
161_F 13_F 0.85 0.00
160_S 22_D 0.84 0.00
78_S 58_N 0.84 0.00
139_Q 40_N 0.84 0.00
107_Y 48_G 0.84 0.00
67_I 83_P 0.83 0.00
168_R 68_G 0.83 0.00
73_F 29_L 0.83 0.00
84_Q 37_A 0.82 0.00
77_K 84_G 0.82 0.00
99_R 45_K 0.82 0.00
92_Q 89_S 0.81 0.00
96_I 42_E 0.81 0.00
113_S 51_N 0.81 0.00
48_E 36_R 0.81 0.00
110_K 38_L 0.81 0.00
143_E 83_P 0.80 0.00
145_L 41_G 0.80 0.00
96_I 14_D 0.80 0.00
38_S 74_T 0.80 0.00
105_G 3_L 0.79 0.00
88_Q 77_R 0.79 0.00
160_S 19_S 0.79 0.00
143_E 16_L 0.78 0.00
74_L 2_A 0.78 0.00
124_A 89_S 0.78 0.00
136_A 56_D 0.77 0.00
174_L 59_Q 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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