May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

NANA - NANK
UniProt: P0A6L4 - P45425
Length: 588
Sequences: 394
Seq/Len: 0.68
I_Prob: 0.00

NANA - N-acetylneuraminate lyase
Paralog alert: 0.62 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: DAPA NANA YAGE YJHH
NANK - N-acetylmannosamine kinase
Paralog alert: 0.81 [within 20: 0.07] - ratio of genomes with paralogs
Cluster includes: ALSK MAK MLC NAGC NAGK NANK YPHH
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
102_A 61_I 1.34 0.00
203_D 136_G 1.07 0.00
35_I 237_V 1.04 0.00
57_S 268_L 1.04 0.00
127_D 139_S 1.03 0.00
42_L 137_V 1.02 0.00
235_L 250_L 1.00 0.00
235_L 102_A 0.99 0.00
125_I 271_A 0.99 0.00
22_L 189_G 0.95 0.00
132_L 151_A 0.94 0.00
128_S 92_L 0.93 0.00
8_V 55_H 0.92 0.00
90_Q 112_A 0.91 0.00
234_K 39_E 0.90 0.00
212_I 66_I 0.88 0.00
89_Q 143_L 0.88 0.00
29_R 120_D 0.87 0.00
66_V 239_V 0.86 0.00
231_T 139_S 0.86 0.00
55_S 123_D 0.86 0.00
128_S 61_I 0.84 0.00
135_V 274_R 0.83 0.00
242_V 140_G 0.83 0.00
22_L 16_A 0.83 0.00
157_T 190_E 0.83 0.00
203_D 102_A 0.83 0.00
41_G 65_G 0.82 0.00
171_L 88_L 0.81 0.00
93_A 140_G 0.81 0.00
125_I 47_A 0.81 0.00
286_K 87_P 0.81 0.00
19_Q 157_T 0.81 0.00
34_N 133_V 0.80 0.00
228_D 254_E 0.79 0.00
125_I 127_I 0.79 0.00
231_T 253_V 0.79 0.00
227_G 82_G 0.79 0.00
125_I 161_P 0.78 0.00
70_A 202_R 0.78 0.00
90_Q 11_T 0.77 0.00
59_R 269_L 0.77 0.00
134_M 188_Q 0.77 0.00
102_A 284_L 0.77 0.00
44_V 200_F 0.77 0.00
95_A 124_M 0.77 0.00
70_A 176_A 0.77 0.00
57_S 31_P 0.77 0.00
124_A 40_A 0.77 0.00
25_A 22_G 0.76 0.00
135_V 102_A 0.76 0.00
206_I 275_H 0.76 0.00
16_F 154_I 0.76 0.00
290_Q 119_G 0.75 0.00
22_L 52_L 0.75 0.00
89_Q 260_E 0.75 0.00
163_A 65_G 0.74 0.00
63_L 6_I 0.74 0.00
232_A 182_G 0.74 0.00
17_D 74_A 0.74 0.00
47_S 66_I 0.74 0.00
160_G 106_A 0.74 0.00
67_A 41_L 0.74 0.00
206_I 14_A 0.74 0.00
139_I 8_I 0.74 0.00
24_K 17_L 0.74 0.00
234_K 215_H 0.73 0.00
129_A 235_Q 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.0348 seconds.