May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

AVTA - SYN
UniProt: P09053 - P0A8M0
Length: 883
Sequences: 665
Seq/Len: 0.80
I_Prob: 0.00

AVTA - Valine--pyruvate aminotransferase
Paralog alert: 0.94 [within 20: 0.22] - ratio of genomes with paralogs
Cluster includes: AAT ALAA ALAC ARNB AVTA CSDA HIS8 ISCS MALY RFFA SERC SUFS TYRB YBDL YDCR YJIR
SYN - Asparagine--tRNA ligase
Paralog alert: 0.91 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: EPMA SYD SYK1 SYK2 SYN
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
366_M 225_K 1.23 0.00
396_E 273_V 1.07 0.00
130_L 227_Y 0.98 0.00
389_M 315_D 0.97 0.00
343_L 279_E 0.93 0.00
83_L 80_V 0.90 0.00
33_I 92_I 0.89 0.00
277_I 26_V 0.89 0.00
167_Y 74_V 0.87 0.00
76_K 80_V 0.85 0.00
403_K 154_E 0.84 0.00
285_G 97_V 0.84 0.00
199_E 432_S 0.84 0.00
182_M 21_T 0.83 0.00
401_G 99_V 0.82 0.00
242_V 374_G 0.81 0.00
407_E 260_N 0.81 0.00
364_V 157_F 0.81 0.00
403_K 223_L 0.81 0.00
364_V 150_R 0.80 0.00
405_L 390_I 0.80 0.00
129_V 277_V 0.80 0.00
315_Q 74_V 0.80 0.00
92_G 21_T 0.79 0.00
409_I 144_L 0.79 0.00
349_P 74_V 0.79 0.00
138_I 453_D 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 2.5849 seconds.