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OPENSEQ.org

LSPA - RLUA
UniProt: P00804 - P0AA37
Length: 383
Sequences: 617
Seq/Len: 1.74
I_Prob: 0.02

LSPA - Lipoprotein signal peptidase
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: LSPA
RLUA - Ribosomal large subunit pseudouridine synthase A
Paralog alert: 0.91 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: RLUA RLUB RLUC RLUD RLUE RLUF RSUA TRUC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
106_G 127_V 1.25 0.02
147_G 74_A 1.07 0.01
135_A 68_S 1.02 0.01
147_G 83_L 0.99 0.01
100_A 70_V 0.95 0.01
17_V 25_V 0.91 0.01
124_M 92_P 0.91 0.01
59_S 197_A 0.87 0.01
18_V 121_N 0.86 0.01
144_I 90_R 0.85 0.01
24_L 172_G 0.85 0.01
34_F 180_F 0.84 0.01
144_I 63_L 0.84 0.01
106_G 119_W 0.83 0.01
90_S 140_E 0.82 0.01
69_R 32_L 0.81 0.01
75_I 23_I 0.81 0.01
21_I 21_D 0.78 0.01
142_T 213_F 0.78 0.00
91_K 215_A 0.75 0.00
57_A 74_A 0.75 0.00
26_S 152_V 0.75 0.00
12_W 169_L 0.74 0.00
134_F 107_A 0.74 0.00
108_A 216_P 0.73 0.00
147_G 24_M 0.73 0.00
147_G 25_V 0.73 0.00
19_V 18_Y 0.72 0.00
134_F 63_L 0.72 0.00
99_I 155_K 0.72 0.00
59_S 86_Q 0.72 0.00
22_I 131_T 0.71 0.00
112_L 90_R 0.71 0.00
149_A 103_H 0.71 0.00
46_L 70_V 0.71 0.00
15_L 198_E 0.70 0.00
36_L 68_S 0.70 0.00
108_A 132_G 0.70 0.00
144_I 14_L 0.70 0.00
124_M 125_Q 0.70 0.00
81_V 208_G 0.70 0.00
108_A 133_K 0.70 0.00
76_A 44_D 0.69 0.00
91_K 140_E 0.69 0.00
103_L 23_I 0.69 0.00
48_L 88_R 0.68 0.00
151_I 147_D 0.68 0.00
75_I 217_A 0.68 0.00
21_I 208_G 0.67 0.00
132_W 152_V 0.67 0.00
125_I 130_E 0.67 0.00
100_A 65_M 0.67 0.00
58_F 88_R 0.67 0.00
89_R 142_V 0.67 0.00
58_F 169_L 0.67 0.00
72_F 139_Y 0.67 0.00
104_I 198_E 0.67 0.00
150_L 15_V 0.67 0.00
34_F 139_Y 0.66 0.00
93_T 89_E 0.66 0.00
29_L 97_V 0.66 0.00
83_L 217_A 0.66 0.00
61_L 34_S 0.66 0.00
112_L 23_I 0.65 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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