| UniProt: | Q46948 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13272 | ||
| Length: | 196 (185) | ||
| Sequences: | 6679 | ||
| Seq/Len: | 36.10 |
| YAJL
Paralog alert: 0.64 [within 20: 0.10] - ratio of genomes with paralogs Cluster includes: YAJL YHBO |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 123_N | 138_Q | 2.851 | 1.00 | |
| 146_W | 171_L | 2.847 | 1.00 | |
| 4_S | 31_K | 2.835 | 1.00 | |
| 123_N | 140_L | 2.738 | 1.00 | |
| 122_G | 148_A | 2.662 | 1.00 | |
| 167_K | 170_D | 2.637 | 1.00 | |
| 6_L | 35_A | 2.587 | 1.00 | |
| 33_T | 67_Y | 2.463 | 1.00 | |
| 120_P | 136_A | 2.415 | 1.00 | |
| 6_L | 67_Y | 2.358 | 1.00 | |
| 24_L | 169_I | 2.295 | 1.00 | |
| 122_G | 147_D | 2.191 | 1.00 | |
| 119_F | 124_M | 2.054 | 1.00 | |
| 33_T | 57_A | 1.938 | 1.00 | |
| 175_R | 179_H | 1.812 | 1.00 | |
| 44_A | 54_L | 1.812 | 1.00 | |
| 124_M | 137_E | 1.809 | 1.00 | |
| 4_S | 33_T | 1.791 | 1.00 | |
| 38_A | 43_L | 1.783 | 1.00 | |
| 148_A | 151_K | 1.742 | 1.00 | |
| 96_H | 102_V | 1.709 | 1.00 | |
| 122_G | 152_L | 1.699 | 1.00 | |
| 114_V | 137_E | 1.687 | 1.00 | |
| 134_I | 139_W | 1.669 | 1.00 | |
| 36_S | 39_S | 1.657 | 1.00 | |
| 146_W | 167_K | 1.622 | 1.00 | |
| 58_P | 61_E | 1.617 | 1.00 | |
| 104_A | 154_T | 1.612 | 1.00 | |
| 13_S | 47_C | 1.599 | 1.00 | |
| 90_E | 93_K | 1.544 | 1.00 | |
| 28_G | 169_I | 1.539 | 1.00 | |
| 153_L | 171_L | 1.538 | 1.00 | |
| 60_V | 87_L | 1.535 | 1.00 | |
| 96_H | 151_K | 1.513 | 1.00 | |
| 5_A | 69_V | 1.51 | 1.00 | |
| 170_D | 175_R | 1.507 | 1.00 | |
| 22_I | 26_V | 1.485 | 1.00 | |
| 122_G | 151_K | 1.474 | 1.00 | |
| 123_N | 147_D | 1.473 | 1.00 | |
| 95_F | 100_R | 1.473 | 1.00 | |
| 15_E | 19_V | 1.423 | 1.00 | |
| 94_Q | 98_S | 1.421 | 1.00 | |
| 30_I | 172_L | 1.403 | 0.99 | |
| 11_P | 46_T | 1.358 | 0.99 | |
| 101_I | 171_L | 1.35 | 0.99 | |
| 44_A | 52_K | 1.341 | 0.99 | |
| 142_K | 163_D | 1.334 | 0.99 | |
| 155_S | 160_T | 1.315 | 0.99 | |
| 96_H | 152_L | 1.308 | 0.99 | |
| 9_L | 18_A | 1.304 | 0.99 | |
| 93_K | 97_R | 1.287 | 0.99 | |
| 13_S | 18_A | 1.284 | 0.99 | |
| 37_V | 85_S | 1.283 | 0.99 | |
| 7_V | 22_I | 1.283 | 0.99 | |
| 96_H | 118_I | 1.281 | 0.99 | |
| 86_T | 90_E | 1.276 | 0.99 | |
| 90_E | 94_Q | 1.274 | 0.99 | |
| 89_V | 93_K | 1.26 | 0.99 | |
| 143_R | 163_D | 1.257 | 0.99 | |
| 63_A | 66_E | 1.248 | 0.99 | |
| 16_T | 20_T | 1.236 | 0.98 | |
| 8_C | 88_L | 1.234 | 0.98 | |
| 134_I | 137_E | 1.234 | 0.98 | |
| 69_V | 101_I | 1.219 | 0.98 | |
| 89_V | 116_H | 1.217 | 0.98 | |
| 64_D | 94_Q | 1.214 | 0.98 | |
| 99_G | 151_K | 1.214 | 0.98 | |
| 146_W | 153_L | 1.212 | 0.98 | |
| 87_L | 90_E | 1.207 | 0.98 | |
| 9_L | 34_T | 1.197 | 0.98 | |
| 173_V | 177_K | 1.194 | 0.98 | |
| 68_D | 100_R | 1.194 | 0.98 | |
| 25_L | 165_G | 1.182 | 0.98 | |
| 46_T | 52_K | 1.178 | 0.98 | |
| 177_K | 180_E | 1.171 | 0.98 | |
| 5_A | 30_I | 1.161 | 0.97 | |
| 109_P | 126_G | 1.149 | 0.97 | |
| 18_A | 34_T | 1.148 | 0.97 | |
| 20_T | 162_I | 1.146 | 0.97 | |
| 131_K | 135_P | 1.145 | 0.97 | |
| 52_K | 56_D | 1.144 | 0.97 | |
| 104_A | 113_L | 1.141 | 0.97 | |
| 13_S | 53_L | 1.131 | 0.97 | |
| 22_I | 34_T | 1.13 | 0.97 | |
| 117_D | 120_P | 1.121 | 0.97 | |
| 176_E | 180_E | 1.109 | 0.96 | |
| 7_V | 71_V | 1.109 | 0.96 | |
| 178_A | 182_A | 1.108 | 0.96 | |
| 167_K | 171_L | 1.103 | 0.96 | |
| 128_P | 139_W | 1.102 | 0.96 | |
| 94_Q | 97_R | 1.098 | 0.96 | |
| 9_L | 13_S | 1.095 | 0.96 | |
| 36_S | 55_A | 1.088 | 0.96 | |
| 101_I | 172_L | 1.084 | 0.96 | |
| 99_G | 102_V | 1.082 | 0.96 | |
| 91_T | 95_F | 1.081 | 0.95 | |
| 69_V | 172_L | 1.064 | 0.95 | |
| 23_D | 27_R | 1.055 | 0.95 | |
| 103_A | 168_I | 1.054 | 0.95 | |
| 104_A | 109_P | 1.051 | 0.94 | |
| 20_T | 23_D | 1.032 | 0.94 | |
| 153_L | 164_F | 1.024 | 0.93 | |
| 44_A | 55_A | 1.017 | 0.93 | |
| 23_D | 26_V | 1.012 | 0.93 | |
| 144_V | 167_K | 1.006 | 0.93 | |
| 24_L | 185_L | 1.003 | 0.93 | |
| 75_G | 78_G | 1.001 | 0.92 | |
| 15_E | 51_V | 1.001 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2ab0A | 2 | 0.9949 | 100 | 0.091 | Contact Map | 0.735 |
| 4k2hA | 14 | 0.9388 | 100 | 0.094 | Contact Map | 0.722 |
| 3ewnA | 1 | 0.9643 | 100 | 0.116 | Contact Map | 0.754 |
| 3noqA | 2 | 0.949 | 100 | 0.118 | Contact Map | 0.711 |
| 2rk3A | 1 | 0.9745 | 100 | 0.118 | Contact Map | 0.746 |
| 3graA | 2 | 0.949 | 100 | 0.121 | Contact Map | 0.699 |
| 3mgkA | 2 | 0.9541 | 100 | 0.122 | Contact Map | 0.723 |
| 3ot1A | 1 | 0.9796 | 100 | 0.127 | Contact Map | 0.733 |
| 4e08A | 2 | 0.9439 | 100 | 0.127 | Contact Map | 0.808 |
| 3er6A | 6 | 0.9541 | 100 | 0.133 | Contact Map | 0.744 |
Sequence Conservation (Image Generated using WebLogo v3)