| UniProt: | P45470 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12784 | ||
| Length: | 172 (168) | ||
| Sequences: | 6890 | ||
| Seq/Len: | 41.01 |
| YHBO
Paralog alert: 0.67 [within 20: 0.10] - ratio of genomes with paralogs Cluster includes: YAJL YHBO |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 4_K | 31_E | 2.887 | 1.00 | |
| 145_V | 169_L | 2.775 | 1.00 | |
| 120_K | 137_E | 2.756 | 1.00 | |
| 165_E | 168_R | 2.72 | 1.00 | |
| 119_R | 147_K | 2.7 | 1.00 | |
| 120_K | 139_Y | 2.669 | 1.00 | |
| 6_A | 35_I | 2.502 | 1.00 | |
| 33_I | 66_F | 2.432 | 1.00 | |
| 6_A | 66_F | 2.39 | 1.00 | |
| 117_R | 135_G | 2.368 | 1.00 | |
| 119_R | 146_D | 2.232 | 1.00 | |
| 24_E | 167_L | 2.17 | 1.00 | |
| 116_I | 121_L | 2.037 | 1.00 | |
| 128_I | 132_K | 1.946 | 1.00 | |
| 33_I | 56_K | 1.94 | 1.00 | |
| 4_K | 33_I | 1.89 | 1.00 | |
| 119_R | 150_L | 1.744 | 1.00 | |
| 42_T | 53_T | 1.712 | 1.00 | |
| 145_V | 165_E | 1.712 | 1.00 | |
| 36_E | 39_A | 1.709 | 1.00 | |
| 57_S | 60_E | 1.692 | 1.00 | |
| 121_L | 136_A | 1.654 | 1.00 | |
| 94_V | 100_V | 1.648 | 1.00 | |
| 13_F | 45_G | 1.643 | 1.00 | |
| 131_V | 138_F | 1.625 | 1.00 | |
| 59_D | 85_R | 1.567 | 1.00 | |
| 28_A | 167_L | 1.56 | 1.00 | |
| 93_F | 98_K | 1.53 | 1.00 | |
| 22_A | 26_R | 1.51 | 1.00 | |
| 88_T | 91_R | 1.509 | 1.00 | |
| 151_V | 169_L | 1.507 | 1.00 | |
| 102_A | 152_T | 1.486 | 1.00 | |
| 94_V | 148_D | 1.486 | 1.00 | |
| 5_I | 68_A | 1.466 | 1.00 | |
| 15_D | 19_T | 1.448 | 1.00 | |
| 119_R | 148_D | 1.445 | 1.00 | |
| 120_K | 146_D | 1.437 | 1.00 | |
| 111_I | 136_A | 1.414 | 1.00 | |
| 92_D | 96_S | 1.39 | 0.99 | |
| 11_D | 44_K | 1.386 | 0.99 | |
| 130_D | 133_N | 1.369 | 0.99 | |
| 37_K | 83_D | 1.36 | 0.99 | |
| 99_P | 169_L | 1.337 | 0.99 | |
| 88_T | 92_D | 1.329 | 0.99 | |
| 91_R | 95_N | 1.326 | 0.99 | |
| 7_V | 22_A | 1.317 | 0.99 | |
| 68_A | 99_P | 1.312 | 0.99 | |
| 9_I | 18_F | 1.288 | 0.99 | |
| 94_V | 150_L | 1.278 | 0.99 | |
| 9_I | 34_T | 1.272 | 0.99 | |
| 145_V | 151_V | 1.27 | 0.99 | |
| 153_S | 158_D | 1.269 | 0.99 | |
| 85_R | 88_T | 1.262 | 0.99 | |
| 63_P | 92_D | 1.253 | 0.99 | |
| 84_N | 88_T | 1.249 | 0.99 | |
| 131_V | 136_A | 1.239 | 0.98 | |
| 97_G | 148_D | 1.228 | 0.98 | |
| 87_V | 113_A | 1.226 | 0.98 | |
| 62_T | 65_E | 1.223 | 0.98 | |
| 102_A | 110_L | 1.214 | 0.98 | |
| 13_F | 18_F | 1.205 | 0.98 | |
| 16_S | 20_S | 1.205 | 0.98 | |
| 87_V | 91_R | 1.202 | 0.98 | |
| 107_P | 123_A | 1.201 | 0.98 | |
| 25_F | 163_N | 1.2 | 0.98 | |
| 8_L | 86_F | 1.195 | 0.98 | |
| 67_D | 98_K | 1.183 | 0.98 | |
| 94_V | 115_V | 1.175 | 0.98 | |
| 7_V | 70_L | 1.174 | 0.98 | |
| 44_K | 51_S | 1.148 | 0.97 | |
| 5_I | 30_H | 1.147 | 0.97 | |
| 22_A | 34_T | 1.133 | 0.97 | |
| 20_S | 160_P | 1.132 | 0.97 | |
| 89_F | 93_F | 1.13 | 0.97 | |
| 18_F | 34_T | 1.125 | 0.97 | |
| 142_E | 161_A | 1.121 | 0.97 | |
| 165_E | 169_L | 1.116 | 0.96 | |
| 13_F | 52_V | 1.097 | 0.96 | |
| 42_T | 51_S | 1.096 | 0.96 | |
| 97_G | 100_V | 1.088 | 0.96 | |
| 51_S | 55_D | 1.087 | 0.96 | |
| 9_I | 13_F | 1.087 | 0.96 | |
| 23_D | 27_K | 1.083 | 0.96 | |
| 20_S | 23_D | 1.07 | 0.95 | |
| 101_F | 162_F | 1.053 | 0.95 | |
| 125_K | 138_F | 1.044 | 0.94 | |
| 92_D | 95_N | 1.028 | 0.94 | |
| 122_T | 144_V | 1.018 | 0.93 | |
| 108_Q | 130_D | 1.007 | 0.93 | |
| 71_L | 109_L | 1.003 | 0.93 | |
| 151_V | 162_F | 1.003 | 0.93 | |
| 143_V | 165_E | 1 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3fseA | 2 | 0.9884 | 100 | 0.067 | Contact Map | 0.872 |
| 1oi4A | 2 | 0.9884 | 100 | 0.08 | Contact Map | 0.85 |
| 3noqA | 2 | 0.9651 | 100 | 0.085 | Contact Map | 0.704 |
| 3ewnA | 1 | 0.9767 | 100 | 0.087 | Contact Map | 0.741 |
| 4hcjA | 1 | 0.9826 | 100 | 0.087 | Contact Map | 0.757 |
| 3graA | 2 | 0.9651 | 100 | 0.093 | Contact Map | 0.756 |
| 2ab0A | 2 | 0.9767 | 100 | 0.099 | Contact Map | 0.75 |
| 2rk3A | 1 | 0.9884 | 100 | 0.1 | Contact Map | 0.742 |
| 2vrnA | 2 | 0.9826 | 100 | 0.1 | Contact Map | 0.841 |
| 3mgkA | 2 | 0.9709 | 100 | 0.1 | Contact Map | 0.724 |
Sequence Conservation (Image Generated using WebLogo v3)