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OPENSEQ.org
YBEQ - Uncharacterized protein YbeQ
UniProt: P77234 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13647
Length: 325 (309)
Sequences: 2631
Seq/Len: 8.51
YBEQ
Paralog alert: 0.92 [within 20: 0.91] - ratio of genomes with paralogs
Cluster includes: YBEQ YBET YJCO
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
251_K 267_F 2.68 1.00
179_E 195_Y 2.483 1.00
101_S 129_S 2.364 1.00
65_Q 95_Q 2.338 1.00
215_N 231_Y 2.326 1.00
287_H 303_Y 2.305 1.00
73_T 89_L 2.296 1.00
118_E 121_V 2.278 1.00
84_Q 87_F 2.166 1.00
143_R 159_Y 2.161 1.00
190_L 193_F 2.153 1.00
154_L 157_F 2.14 1.00
207_Q 237_Q 2.126 1.00
226_Q 229_Y 2.106 1.00
262_A 265_E 2.043 1.00
135_Q 165_Q 2.02 1.00
28_Q 59_Q 1.986 1.00
243_Y 273_C 1.968 1.00
171_Q 201_Q 1.963 1.00
135_Q 158_W 1.938 1.00
36_N 53_L 1.927 1.00
65_Q 88_W 1.892 1.00
28_Q 52_W 1.89 1.00
207_Q 230_W 1.888 1.00
171_Q 194_W 1.885 1.00
279_W 309_S 1.881 1.00
246_I 250_Y 1.863 1.00
85_A 89_L 1.856 1.00
298_Q 301_D 1.824 1.00
48_K 51_Y 1.8 1.00
107_T 123_Y 1.796 1.00
101_S 122_W 1.773 1.00
232_L 236_A 1.771 1.00
243_Y 266_W 1.768 1.00
68_L 72_Y 1.749 1.00
307_Q 315_S 1.727 1.00
160_K 164_L 1.691 1.00
102_N 137_N 1.651 1.00
81_D 84_Q 1.613 1.00
230_W 233_K 1.612 1.00
282_L 286_Y 1.583 1.00
271_A 279_W 1.577 1.00
119_A 123_Y 1.569 1.00
196_L 200_Q 1.566 1.00
247_G 267_F 1.549 1.00
198_S 206_A 1.541 1.00
210_I 214_Y 1.537 1.00
90_K 118_E 1.498 1.00
66_Y 97_H 1.495 1.00
266_W 269_K 1.494 1.00
122_W 125_I 1.494 1.00
124_Q 128_E 1.479 1.00
92_A 100_A 1.468 0.99
136_N 167_H 1.448 0.99
29_Y 61_H 1.445 0.99
115_N 118_E 1.44 0.99
172_N 209_Q 1.436 0.99
124_Q 154_L 1.432 0.99
162_A 170_A 1.411 0.99
174_L 178_Y 1.409 0.99
279_W 302_L 1.397 0.99
151_D 154_L 1.391 0.99
57_A 65_Q 1.381 0.99
93_A 101_S 1.377 0.99
155_A 159_Y 1.375 0.99
138_L 142_Y 1.373 0.99
158_W 161_Q 1.373 0.99
286_Y 292_R 1.368 0.99
86_I 90_K 1.368 0.99
75_D 78_R 1.366 0.99
49_A 53_L 1.35 0.99
88_W 91_K 1.348 0.99
208_F 239_S 1.333 0.99
75_D 80_K 1.332 0.99
229_Y 233_K 1.327 0.99
259_D 262_A 1.326 0.99
194_W 197_K 1.322 0.99
50_F 54_K 1.316 0.99
54_K 58_E 1.314 0.99
223_D 226_Q 1.31 0.99
268_T 272_E 1.309 0.99
109_D 112_E 1.307 0.99
187_N 190_L 1.302 0.99
20_A 52_W 1.293 0.98
244_V 281_N 1.29 0.98
316_Q 319_R 1.29 0.98
253_G 256_V 1.289 0.98
192_A 196_L 1.283 0.98
300_L 304_R 1.28 0.98
52_W 55_L 1.271 0.98
66_Y 103_A 1.271 0.98
199_A 207_Q 1.266 0.98
235_A 243_Y 1.263 0.98
159_Y 173_N 1.257 0.98
120_V 148_V 1.254 0.98
264_F 268_T 1.254 0.98
57_A 88_W 1.252 0.98
178_Y 190_L 1.248 0.98
265_E 269_K 1.241 0.98
195_Y 209_Q 1.236 0.98
53_L 67_S 1.233 0.98
181_G 184_V 1.233 0.98
289_G 292_R 1.226 0.98
228_M 246_I 1.219 0.97
232_L 262_A 1.215 0.97
45_D 48_K 1.211 0.97
228_M 256_V 1.208 0.97
54_K 84_Q 1.2 0.97
31_V 35_Y 1.2 0.97
118_E 122_W 1.2 0.97
90_K 94_L 1.199 0.97
299_A 303_Y 1.199 0.97
69_G 88_W 1.198 0.97
191_A 195_Y 1.194 0.97
283_A 303_Y 1.193 0.97
208_F 242_A 1.191 0.97
267_F 281_N 1.191 0.97
234_A 239_S 1.191 0.97
172_N 203_N 1.184 0.97
145_G 148_V 1.184 0.97
17_I 21_E 1.17 0.97
66_Y 100_A 1.163 0.96
136_N 173_N 1.157 0.96
214_Y 220_V 1.146 0.96
69_G 89_L 1.146 0.96
270_A 278_A 1.138 0.96
217_G 220_V 1.132 0.96
20_A 28_Q 1.132 0.96
92_A 97_H 1.125 0.95
136_N 170_A 1.122 0.95
211_A 231_Y 1.119 0.95
105_G 123_Y 1.118 0.95
295_D 298_Q 1.117 0.95
262_A 266_W 1.116 0.95
234_A 242_A 1.115 0.95
156_F 160_K 1.112 0.95
264_F 292_R 1.109 0.95
109_D 114_P 1.109 0.95
304_R 308_S 1.108 0.95
192_A 210_I 1.103 0.95
75_D 81_D 1.099 0.95
260_Y 290_E 1.098 0.95
263_A 267_F 1.098 0.95
228_M 232_L 1.094 0.94
156_F 174_L 1.094 0.94
72_Y 78_R 1.087 0.94
126_A 134_A 1.087 0.94
198_S 203_N 1.087 0.94
123_Y 137_N 1.085 0.94
127_A 135_Q 1.085 0.94
250_Y 256_V 1.08 0.94
102_N 131_M 1.07 0.93
244_V 275_D 1.067 0.93
251_K 260_Y 1.06 0.93
139_G 159_Y 1.06 0.93
38_D 45_D 1.058 0.93
29_Y 64_A 1.056 0.93
116_Y 146_N 1.056 0.93
102_N 134_A 1.05 0.93
264_F 285_M 1.048 0.93
56_A 64_A 1.044 0.92
32_G 53_L 1.042 0.92
86_I 112_E 1.031 0.92
156_F 184_V 1.031 0.92
192_A 220_V 1.028 0.92
163_A 194_W 1.028 0.92
302_L 305_K 1.026 0.91
35_Y 41_I 1.025 0.91
264_F 282_L 1.013 0.91
71_K 177_L 1.009 0.91
213_D 249_M 1.005 0.90
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
2xm6A10.99691000.22Contact Map0.876
1ouvA10.83381000.409Contact Map0.824
3e4bA40.98151000.523Contact Map0.698
3rjvA10.630899.90.678Contact Map0.673
1klxA10.424699.90.688Contact Map0.76
1w3bA20.910899.80.747Contact Map0.784
1xi4A90.846299.70.756Contact Map0.039
4bujB20.923199.70.766Contact Map0.708
2xpiA20.901599.70.769Contact Map0.733
4horA10.932399.70.771Contact Map0.709
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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