| UniProt: | P0AF56 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11951 | ||
| Length: | 229 (207) | ||
| Sequences: | 3255 | ||
| Seq/Len: | 15.72 |
| YJCO
Paralog alert: 0.78 [within 20: 0.63] - ratio of genomes with paralogs Cluster includes: YBEQ YBET YJCO |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 190_L | 208_L | 2.777 | 1.00 | |
| 88_Q | 91_V | 2.598 | 1.00 | |
| 153_A | 169_F | 2.531 | 1.00 | |
| 203_K | 206_H | 2.435 | 1.00 | |
| 124_K | 127_S | 2.429 | 1.00 | |
| 46_F | 58_A | 2.409 | 1.00 | |
| 38_Q | 64_S | 2.397 | 1.00 | |
| 53_K | 56_Y | 2.369 | 1.00 | |
| 164_K | 167_W | 2.308 | 1.00 | |
| 105_E | 135_D | 2.276 | 1.00 | |
| 145_Q | 168_Y | 2.227 | 1.00 | |
| 212_C | 220_C | 2.162 | 1.00 | |
| 113_V | 129_L | 2.105 | 1.00 | |
| 105_E | 128_L | 2.093 | 1.00 | |
| 70_C | 99_A | 2.039 | 1.00 | |
| 38_Q | 57_W | 1.943 | 1.00 | |
| 78_I | 93_A | 1.921 | 1.00 | |
| 70_C | 92_L | 1.862 | 1.00 | |
| 130_E | 134_E | 1.776 | 1.00 | |
| 59_Q | 63_D | 1.772 | 1.00 | |
| 145_Q | 175_I | 1.67 | 1.00 | |
| 108_L | 112_L | 1.656 | 1.00 | |
| 71_A | 104_G | 1.563 | 1.00 | |
| 89_A | 93_A | 1.551 | 1.00 | |
| 94_E | 98_Q | 1.549 | 1.00 | |
| 62_A | 70_C | 1.544 | 1.00 | |
| 152_Y | 158_I | 1.527 | 1.00 | |
| 128_L | 131_N | 1.517 | 1.00 | |
| 85_D | 88_Q | 1.502 | 1.00 | |
| 90_K | 94_E | 1.487 | 1.00 | |
| 185_A | 189_F | 1.48 | 1.00 | |
| 149_G | 169_F | 1.477 | 1.00 | |
| 54_A | 58_A | 1.476 | 1.00 | |
| 39_Y | 66_D | 1.458 | 1.00 | |
| 182_E | 214_E | 1.454 | 1.00 | |
| 166_T | 170_K | 1.451 | 1.00 | |
| 148_L | 152_Y | 1.435 | 1.00 | |
| 39_Y | 69_A | 1.43 | 1.00 | |
| 27_L | 31_E | 1.419 | 1.00 | |
| 126_I | 130_E | 1.416 | 1.00 | |
| 126_I | 158_I | 1.38 | 0.99 | |
| 207_W | 210_L | 1.376 | 0.99 | |
| 125_A | 129_L | 1.372 | 0.99 | |
| 205_L | 209_N | 1.371 | 0.99 | |
| 73_L | 77_K | 1.368 | 0.99 | |
| 209_N | 213_M | 1.363 | 0.99 | |
| 55_E | 59_Q | 1.356 | 0.99 | |
| 106_V | 137_E | 1.343 | 0.99 | |
| 170_K | 174_A | 1.335 | 0.99 | |
| 168_Y | 171_R | 1.332 | 0.99 | |
| 88_Q | 92_L | 1.327 | 0.99 | |
| 25_Q | 29_A | 1.312 | 0.99 | |
| 182_E | 207_W | 1.311 | 0.99 | |
| 30_A | 38_Q | 1.307 | 0.99 | |
| 166_T | 196_F | 1.302 | 0.99 | |
| 41_L | 45_W | 1.293 | 0.99 | |
| 26_Y | 40_F | 1.292 | 0.99 | |
| 39_Y | 72_L | 1.265 | 0.99 | |
| 50_D | 53_K | 1.264 | 0.99 | |
| 206_H | 210_L | 1.258 | 0.99 | |
| 55_E | 82_V | 1.255 | 0.99 | |
| 90_K | 108_L | 1.255 | 0.99 | |
| 86_Y | 116_Q | 1.254 | 0.99 | |
| 183_Y | 216_F | 1.238 | 0.98 | |
| 186_G | 208_L | 1.236 | 0.98 | |
| 221_E | 224_E | 1.233 | 0.98 | |
| 122_Y | 156_V | 1.226 | 0.98 | |
| 192_G | 195_G | 1.224 | 0.98 | |
| 42_A | 58_A | 1.222 | 0.98 | |
| 106_V | 147_L | 1.216 | 0.98 | |
| 203_K | 207_W | 1.213 | 0.98 | |
| 109_A | 129_L | 1.211 | 0.98 | |
| 27_L | 53_K | 1.211 | 0.98 | |
| 71_A | 107_T | 1.211 | 0.98 | |
| 92_L | 95_K | 1.209 | 0.98 | |
| 90_K | 118_G | 1.199 | 0.98 | |
| 97_A | 105_E | 1.194 | 0.98 | |
| 55_E | 73_L | 1.193 | 0.98 | |
| 30_A | 57_W | 1.191 | 0.98 | |
| 59_Q | 88_Q | 1.182 | 0.98 | |
| 166_T | 185_A | 1.18 | 0.98 | |
| 183_Y | 222_E | 1.176 | 0.98 | |
| 74_A | 93_A | 1.173 | 0.98 | |
| 146_M | 184_W | 1.168 | 0.97 | |
| 121_D | 124_K | 1.154 | 0.97 | |
| 115_T | 118_G | 1.15 | 0.97 | |
| 200_N | 203_K | 1.138 | 0.97 | |
| 29_A | 34_D | 1.136 | 0.97 | |
| 119_K | 159_K | 1.132 | 0.97 | |
| 130_E | 164_K | 1.132 | 0.97 | |
| 126_I | 148_L | 1.131 | 0.97 | |
| 94_E | 124_K | 1.124 | 0.97 | |
| 133_S | 168_Y | 1.122 | 0.97 | |
| 56_Y | 60_K | 1.114 | 0.96 | |
| 161_D | 164_K | 1.095 | 0.96 | |
| 205_L | 223_F | 1.086 | 0.96 | |
| 106_V | 144_A | 1.082 | 0.96 | |
| 146_M | 177_R | 1.06 | 0.95 | |
| 93_A | 107_T | 1.057 | 0.95 | |
| 110_H | 129_L | 1.052 | 0.95 | |
| 25_Q | 28_K | 1.051 | 0.94 | |
| 132_A | 137_E | 1.051 | 0.94 | |
| 36_R | 66_D | 1.05 | 0.94 | |
| 124_K | 128_L | 1.037 | 0.94 | |
| 61_A | 66_D | 1.025 | 0.93 | |
| 102_K | 137_E | 1.022 | 0.93 | |
| 155_G | 158_I | 1.021 | 0.93 | |
| 204_A | 208_L | 1.016 | 0.93 | |
| 26_Y | 29_A | 1.01 | 0.93 | |
| 53_K | 57_W | 1.008 | 0.93 | |
| 170_K | 185_A | 1.005 | 0.93 | |
| 56_Y | 91_V | 1.004 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2xm6A | 1 | 0.9694 | 100 | 0.249 | Contact Map | 0.848 |
| 1ouvA | 1 | 0.9694 | 100 | 0.33 | Contact Map | 0.817 |
| 3e4bA | 4 | 0.9607 | 99.9 | 0.519 | Contact Map | 0.718 |
| 3rjvA | 1 | 0.8952 | 99.9 | 0.539 | Contact Map | 0.663 |
| 1klxA | 1 | 0.6026 | 99.9 | 0.565 | Contact Map | 0.687 |
| 2q7fA | 2 | 0.9083 | 99.2 | 0.758 | Contact Map | 0.776 |
| 3dssA | 1 | 0.952 | 99.2 | 0.758 | Contact Map | 0.421 |
| 1w3bA | 2 | 0.9083 | 99.2 | 0.759 | Contact Map | 0.761 |
| 3draA | 1 | 0.9214 | 99.2 | 0.761 | Contact Map | 0.41 |
| 2xpiA | 2 | 0.9258 | 99.2 | 0.761 | Contact Map | 0.741 |
Sequence Conservation (Image Generated using WebLogo v3)