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RNFE - Electron transport complex protein RnfE
UniProt: P77179 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13938
Length: 231 (214)
Sequences: 765
Seq/Len: 3.57
RNFE
Paralog alert: 0.31 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RNFA RNFE
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
54_L 124_P 3.38 1.00
42_G 139_T 3.067 1.00
35_A 158_F 2.578 1.00
54_L 128_A 2.516 1.00
59_L 63_T 2.435 1.00
27_P 138_A 2.288 1.00
10_Q 15_N 2.201 1.00
54_L 58_T 2.172 1.00
35_A 143_F 2.011 1.00
39_L 158_F 2.009 1.00
84_Q 95_Y 1.984 1.00
198_L 202_G 1.957 1.00
58_T 124_P 1.932 1.00
19_L 141_A 1.881 1.00
38_A 42_G 1.863 1.00
123_G 126_L 1.828 0.99
87_I 91_A 1.82 0.99
8_I 133_S 1.783 0.99
9_V 14_K 1.759 0.99
147_S 157_L 1.752 0.99
46_T 139_T 1.743 0.99
147_S 151_I 1.717 0.99
21_Q 67_I 1.665 0.99
50_T 128_A 1.646 0.99
167_S 170_K 1.609 0.98
88_N 95_Y 1.581 0.98
151_I 157_L 1.541 0.97
148_L 195_G 1.533 0.97
165_L 173_R 1.509 0.97
39_L 143_F 1.505 0.97
55_T 79_V 1.499 0.97
17_S 21_Q 1.484 0.97
38_A 139_T 1.472 0.96
151_I 176_I 1.448 0.96
76_I 115_A 1.441 0.96
145_L 195_G 1.424 0.95
7_V 118_F 1.398 0.95
45_T 139_T 1.393 0.95
49_L 53_N 1.392 0.95
44_A 87_I 1.375 0.94
43_L 47_L 1.374 0.94
35_A 146_G 1.371 0.94
202_G 206_I 1.336 0.93
3_E 118_F 1.327 0.93
51_L 54_L 1.327 0.93
122_K 127_S 1.325 0.93
17_S 24_G 1.323 0.93
35_A 38_A 1.292 0.91
34_T 37_N 1.279 0.91
52_T 79_V 1.276 0.91
110_I 138_A 1.257 0.90
15_N 21_Q 1.255 0.90
76_I 203_K 1.235 0.89
152_I 186_A 1.233 0.89
35_A 157_L 1.209 0.87
43_L 46_T 1.206 0.87
27_P 45_T 1.205 0.87
40_G 94_L 1.2 0.87
29_L 192_A 1.198 0.87
51_L 79_V 1.198 0.87
72_Y 120_A 1.189 0.86
32_T 38_A 1.188 0.86
199_M 202_G 1.185 0.86
73_V 112_V 1.181 0.86
92_F 96_Q 1.177 0.85
12_L 140_C 1.172 0.85
81_S 85_M 1.17 0.85
25_L 196_L 1.164 0.84
71_I 112_V 1.162 0.84
49_L 115_A 1.152 0.84
143_F 158_F 1.146 0.83
8_I 129_L 1.144 0.83
50_T 132_F 1.144 0.83
141_A 199_M 1.144 0.83
7_V 10_Q 1.132 0.82
39_L 125_A 1.131 0.82
4_I 129_L 1.124 0.82
22_L 200_L 1.123 0.81
146_G 156_T 1.118 0.81
44_A 101_F 1.117 0.81
75_I 90_Y 1.116 0.81
168_W 171_V 1.112 0.81
3_E 6_D 1.103 0.80
34_T 121_K 1.101 0.80
63_T 71_I 1.1 0.80
153_G 187_M 1.089 0.79
23_L 113_G 1.087 0.78
37_N 97_S 1.086 0.78
24_G 108_N 1.082 0.78
18_A 28_L 1.077 0.78
175_E 178_H 1.058 0.76
24_G 110_I 1.057 0.76
86_L 90_Y 1.053 0.75
54_L 125_A 1.052 0.75
10_Q 14_K 1.052 0.75
50_T 131_G 1.049 0.75
118_F 122_K 1.048 0.75
168_W 172_L 1.034 0.73
145_L 196_L 1.033 0.73
151_I 185_L 1.027 0.73
24_G 109_C 1.025 0.73
144_V 148_L 1.024 0.72
184_L 188_L 1.016 0.72
6_D 14_K 1.015 0.71
19_L 203_K 1.012 0.71
118_F 126_L 1.007 0.71
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
4ddjA10.12126.70.973Contact Map0.091
2jq3A10.11695.20.974Contact Map0.046
1n69A30.12124.80.975Contact Map0.179
4gxbB10.15152.90.977Contact Map
4iqyA20.40692.70.977Contact Map0.387
2kv5A10.13852.70.977Contact Map0.259
2cfqA10.78792.40.978Contact Map0.12
3bqpA20.12122.30.978Contact Map0.046
2kj8A10.164520.979Contact Map0.081
1nklA10.12121.70.98Contact Map0.176
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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