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RNFA - Electron transport complex protein RnfA
UniProt: P0A766 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13933
Length: 193 (191)
Sequences: 1334
Seq/Len: 6.98

RNFA
Paralog alert: 0.97 [within 20: 0.70] - ratio of genomes with paralogs
Cluster includes: RNFA RNFE
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
27_P 144_F 3.819 1.00
42_G 145_S 3.515 1.00
8_F 139_S 3.122 1.00
50_T 138_F 3.077 1.00
92_V 96_S 2.875 1.00
10_G 15_N 2.769 1.00
54_I 134_A 2.736 1.00
54_I 130_F 2.519 1.00
129_N 132_Q 2.454 1.00
46_T 145_S 2.363 1.00
165_A 168_R 2.262 1.00
19_L 147_V 2.143 1.00
89_E 100_Y 1.974 1.00
35_L 149_V 1.921 1.00
60_D 73_R 1.905 1.00
54_I 58_L 1.902 1.00
51_L 84_V 1.855 1.00
38_A 42_G 1.851 1.00
4_Y 135_L 1.77 1.00
50_T 137_G 1.732 1.00
9_V 14_V 1.595 1.00
40_G 99_L 1.591 1.00
52_A 84_V 1.583 1.00
44_A 81_I 1.54 0.99
153_A 157_R 1.499 0.99
50_T 134_A 1.486 0.99
87_F 91_V 1.472 0.99
46_T 142_V 1.466 0.99
151_F 177_A 1.434 0.99
35_L 152_A 1.405 0.99
128_H 133_S 1.393 0.99
17_F 140_A 1.369 0.98
44_A 92_V 1.35 0.98
45_T 145_S 1.34 0.98
58_L 62_W 1.34 0.98
58_L 130_F 1.322 0.98
52_A 120_A 1.312 0.98
49_M 141_A 1.293 0.98
93_R 100_Y 1.281 0.97
7_L 135_L 1.278 0.97
145_S 149_V 1.272 0.97
166_P 171_A 1.256 0.97
39_M 149_V 1.249 0.97
78_I 117_L 1.218 0.96
27_P 45_T 1.211 0.96
65_I 70_I 1.211 0.96
59_I 63_I 1.207 0.96
8_F 135_L 1.201 0.96
21_K 72_L 1.198 0.96
81_I 120_A 1.197 0.96
147_V 151_F 1.189 0.95
38_A 145_S 1.18 0.95
34_K 37_T 1.164 0.95
7_L 132_Q 1.156 0.94
4_Y 131_L 1.152 0.94
17_F 24_G 1.142 0.94
58_L 61_T 1.125 0.93
10_G 14_V 1.117 0.93
17_F 21_K 1.11 0.93
43_L 47_F 1.109 0.93
53_S 123_N 1.108 0.93
76_A 117_L 1.105 0.93
35_L 38_A 1.103 0.92
12_V 146_L 1.099 0.92
89_E 93_R 1.097 0.92
188_S 191_V 1.083 0.92
174_L 180_M 1.08 0.91
65_I 68_N 1.071 0.91
73_R 77_F 1.063 0.91
23_L 118_G 1.058 0.90
32_S 148_M 1.052 0.90
18_V 28_F 1.048 0.90
44_A 106_F 1.035 0.89
91_V 95_T 1.033 0.89
15_N 21_K 1.032 0.89
163_V 172_I 1.029 0.89
13_L 19_L 1.028 0.88
53_S 137_G 1.024 0.88
133_S 137_G 1.023 0.88
7_L 10_G 1.016 0.88
86_Q 90_M 1.015 0.88
24_G 113_N 1.013 0.87
107_L 111_T 1.011 0.87
123_N 136_Y 1.011 0.87
48_V 88_T 1.009 0.87
24_G 108_P 1.006 0.87
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
3hzqA10.404130.969Contact Map0.186
1pp5A10.09842.90.969Contact Map0.276
4ddjA10.14512.90.969Contact Map0.101
3vouA20.52852.70.97Contact Map0.422
1okcA10.362720.971Contact Map0.43
2pjvA10.08811.70.972Contact Map1
3b5dA20.55961.30.974Contact Map0.075
2ariA10.09331.30.974Contact Map0.241
2i68A20.56991.30.975Contact Map0
2ls3A10.15031.30.975Contact Map0.673

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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