May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
YNBA - Inner membrane protein YnbA
UniProt: P76090 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13748
Length: 201 (199)
Sequences: 805
Seq/Len: 4.05
YNBA
Paralog alert: 0.36 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: YNBA YNJF
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
27_T 30_H 2.801 1.00
96_I 184_L 2.147 1.00
87_A 132_L 2.145 1.00
22_Y 75_L 2.096 1.00
39_S 97_S 2.035 1.00
18_M 78_E 2.016 1.00
122_C 184_L 1.997 1.00
36_L 93_G 1.972 1.00
157_L 161_A 1.962 1.00
45_L 61_V 1.935 1.00
106_L 117_I 1.882 1.00
26_V 34_A 1.834 1.00
96_I 125_L 1.805 1.00
33_L 37_A 1.642 0.99
18_M 75_L 1.622 0.99
31_I 34_A 1.62 0.99
19_F 78_E 1.606 0.99
46_L 159_G 1.6 0.99
31_I 75_L 1.597 0.99
19_F 23_K 1.594 0.99
96_I 122_C 1.585 0.98
28_A 81_Q 1.569 0.98
74_M 78_E 1.525 0.98
20_W 24_H 1.505 0.98
69_N 90_N 1.503 0.98
20_W 23_K 1.48 0.97
192_R 195_L 1.479 0.97
83_T 158_W 1.44 0.97
119_M 180_S 1.434 0.97
46_L 104_P 1.421 0.96
116_V 176_W 1.419 0.96
87_A 136_I 1.419 0.96
85_L 195_L 1.418 0.96
91_E 130_G 1.417 0.96
96_I 187_A 1.416 0.96
146_F 154_I 1.408 0.96
147_G 150_D 1.384 0.96
31_I 71_L 1.383 0.96
158_W 175_L 1.365 0.95
144_G 186_T 1.362 0.95
105_F 155_F 1.361 0.95
88_I 194_V 1.322 0.94
4_Y 149_S 1.32 0.94
91_E 132_L 1.316 0.94
70_A 149_S 1.303 0.93
45_L 57_L 1.297 0.93
90_N 148_K 1.289 0.93
177_S 181_I 1.266 0.92
21_L 26_V 1.257 0.92
146_F 182_L 1.242 0.91
154_I 175_L 1.238 0.91
88_I 129_C 1.224 0.90
29_N 79_C 1.211 0.90
7_K 11_Q 1.209 0.90
40_L 100_A 1.207 0.89
55_F 108_L 1.205 0.89
43_G 104_P 1.203 0.89
65_R 148_K 1.198 0.89
91_E 151_R 1.184 0.88
91_E 135_T 1.183 0.88
157_L 160_L 1.173 0.88
29_N 192_R 1.162 0.87
13_L 16_P 1.156 0.87
95_V 148_K 1.155 0.86
69_N 148_K 1.144 0.86
95_V 151_R 1.129 0.85
91_E 148_K 1.122 0.84
175_L 178_I 1.113 0.84
29_N 85_L 1.111 0.83
126_T 186_T 1.111 0.83
33_L 89_L 1.11 0.83
99_I 121_F 1.109 0.83
98_D 151_R 1.103 0.83
133_A 186_T 1.1 0.83
130_G 142_Y 1.091 0.82
59_P 156_G 1.088 0.82
38_L 61_V 1.085 0.81
3_L 6_I 1.078 0.81
88_I 191_C 1.077 0.81
65_R 90_N 1.069 0.80
92_T 96_I 1.064 0.80
66_M 148_K 1.057 0.79
42_T 61_V 1.057 0.79
131_L 134_Q 1.051 0.78
3_L 153_L 1.044 0.78
63_F 66_M 1.037 0.77
22_Y 79_C 1.033 0.77
20_W 41_L 1.019 0.75
33_L 178_I 1.016 0.75
127_E 148_K 1.013 0.75
39_S 151_R 1.007 0.74
29_N 42_T 1.001 0.74
181_I 185_W 1 0.73
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2eo2A10.16926.50.956Contact Map0.432
2dlwA10.36824.20.959Contact Map0.182
4hrrA40.32842.50.964Contact Map0.732
4hcxA20.29851.80.967Contact Map0.635
3owtC10.07961.40.968Contact Map0.384
3j1rA210.12941.40.969Contact Map0.507
4leuA10.50751.40.969Contact Map0.415
1wu3I10.26871.30.969Contact Map0.602
1jb0B10.35821.30.969Contact Map0.425
4juwP10.14931.20.97Contact Map0.372
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
Page generated in 0.0268 seconds.