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OPENSEQ.org
YNJF - Inner membrane protein YnjF
UniProt: P76226 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG14008
Length: 206 (203)
Sequences: 623
Seq/Len: 3.07
YNJF
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YNBA YNJF
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
45_F 57_V 2.769 1.00
82_G 132_L 2.677 1.00
27_T 30_G 2.575 1.00
46_L 168_C 2.505 1.00
91_L 186_W 2.286 1.00
18_V 74_R 2.231 1.00
101_I 112_G 2.146 1.00
39_G 92_F 2.076 1.00
111_A 178_A 1.98 1.00
46_L 99_G 1.973 1.00
36_F 88_L 1.954 1.00
26_I 34_V 1.94 1.00
22_D 71_L 1.923 0.99
19_R 74_R 1.798 0.99
91_L 189_T 1.768 0.99
86_I 130_A 1.665 0.98
117_F 186_W 1.662 0.98
18_V 71_L 1.66 0.98
194_W 197_Y 1.543 0.97
31_L 71_L 1.526 0.96
70_A 74_R 1.476 0.95
167_G 177_F 1.46 0.95
33_L 84_L 1.455 0.95
83_F 196_G 1.435 0.94
31_L 34_V 1.42 0.94
86_I 135_K 1.42 0.94
94_A 116_L 1.395 0.93
20_V 24_P 1.37 0.92
117_F 189_T 1.333 0.91
45_F 53_A 1.322 0.90
114_W 182_G 1.318 0.90
78_T 148_F 1.313 0.90
83_F 129_F 1.306 0.90
132_L 148_F 1.299 0.89
21_L 26_I 1.293 0.89
42_A 57_V 1.271 0.88
78_T 167_G 1.265 0.88
155_T 163_L 1.263 0.88
86_I 132_L 1.262 0.88
29_D 194_W 1.257 0.87
155_T 184_L 1.25 0.87
28_P 77_L 1.239 0.86
90_F 160_T 1.236 0.86
121_G 155_T 1.235 0.86
80_A 197_Y 1.228 0.86
66_G 158_T 1.224 0.85
156_E 159_E 1.217 0.85
37_A 41_L 1.208 0.84
33_L 37_A 1.206 0.84
87_S 129_F 1.204 0.84
166_L 169_L 1.185 0.83
51_Y 103_A 1.183 0.82
91_L 117_F 1.18 0.82
138_I 141_P 1.174 0.82
128_A 160_T 1.17 0.82
119_F 135_K 1.169 0.81
163_L 177_F 1.166 0.81
54_A 92_F 1.162 0.81
94_A 120_I 1.161 0.81
122_T 128_A 1.16 0.81
54_A 168_C 1.157 0.81
128_A 132_L 1.157 0.81
186_W 189_T 1.156 0.80
43_L 96_V 1.148 0.80
7_H 11_K 1.138 0.79
86_I 160_T 1.137 0.79
59_L 62_R 1.131 0.78
130_A 134_A 1.125 0.78
28_P 71_L 1.125 0.78
12_P 54_A 1.117 0.77
148_F 151_L 1.117 0.77
8_P 12_P 1.115 0.77
67_L 70_A 1.114 0.77
22_D 75_R 1.108 0.76
93_Y 165_V 1.103 0.76
133_A 188_T 1.083 0.74
197_Y 201_K 1.08 0.74
29_D 80_A 1.057 0.71
55_L 165_V 1.056 0.71
114_W 185_C 1.053 0.71
90_F 157_G 1.044 0.70
122_T 160_T 1.039 0.70
62_R 83_F 1.038 0.70
23_K 201_K 1.037 0.69
42_A 96_V 1.034 0.69
86_I 136_H 1.027 0.68
87_S 91_L 1.024 0.68
53_A 57_V 1.024 0.68
2_L 96_V 1.023 0.68
37_A 190_F 1.022 0.68
131_A 140_N 1.022 0.68
166_L 170_F 1.021 0.68
164_F 181_F 1.02 0.68
56_V 63_L 1.02 0.68
18_V 24_P 1.018 0.67
146_K 150_Y 1.016 0.67
19_R 23_K 1.009 0.66
131_A 134_A 1.007 0.66
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2eo2A10.160230.967Contact Map0.323
3dpjA80.36412.50.968Contact Map0.313
3b64A10.2332.40.968Contact Map0.453
3fwuA10.2332.40.968Contact Map0.459
4leuA10.49032.30.969Contact Map0.386
3fwtA10.2332.10.969Contact Map0.389
3djhA30.24761.90.97Contact Map0.472
1pd7B10.10191.90.97Contact Map0.516
3pcvA10.4661.70.971Contact Map0.412
4hrrA40.31551.70.971Contact Map0.628
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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