| UniProt: | P67699 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13784 | ||
| Length: | 94 (91) | ||
| Sequences: | 1062 | ||
| Seq/Len: | 11.67 |
| YDDM
Paralog alert: 0.52 [within 20: 0.02] - ratio of genomes with paralogs Cluster includes: YBAQ YDDM |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 69_N | 73_A | 2.384 | 1.00 | |
| 26_E | 30_A | 2.293 | 1.00 | |
| 57_S | 64_P | 2.289 | 1.00 | |
| 37_T | 52_M | 2.264 | 1.00 | |
| 25_R | 29_R | 2.174 | 1.00 | |
| 71_Q | 75_S | 2.136 | 1.00 | |
| 40_R | 46_A | 2.054 | 1.00 | |
| 25_R | 35_P | 2.05 | 1.00 | |
| 24_L | 39_S | 2.011 | 1.00 | |
| 57_S | 63_S | 2 | 1.00 | |
| 30_A | 59_V | 1.99 | 1.00 | |
| 57_S | 62_S | 1.852 | 1.00 | |
| 77_A | 81_K | 1.85 | 1.00 | |
| 39_S | 43_T | 1.807 | 1.00 | |
| 15_E | 18_D | 1.632 | 1.00 | |
| 36_S | 39_S | 1.601 | 1.00 | |
| 36_S | 40_R | 1.546 | 1.00 | |
| 41_L | 48_L | 1.441 | 1.00 | |
| 27_F | 56_L | 1.4 | 0.99 | |
| 11_D | 15_E | 1.373 | 0.99 | |
| 41_L | 52_M | 1.369 | 0.99 | |
| 85_V | 88_L | 1.363 | 0.99 | |
| 40_R | 45_K | 1.341 | 0.99 | |
| 14_Q | 18_D | 1.32 | 0.99 | |
| 64_P | 76_L | 1.289 | 0.99 | |
| 53_A | 64_P | 1.274 | 0.99 | |
| 24_L | 36_S | 1.25 | 0.99 | |
| 22_V | 27_F | 1.203 | 0.98 | |
| 33_I | 52_M | 1.197 | 0.98 | |
| 54_I | 79_A | 1.177 | 0.98 | |
| 33_I | 55_K | 1.167 | 0.97 | |
| 27_F | 38_A | 1.161 | 0.97 | |
| 24_L | 42_L | 1.159 | 0.97 | |
| 35_P | 39_S | 1.159 | 0.97 | |
| 62_S | 66_M | 1.156 | 0.97 | |
| 59_V | 91_L | 1.146 | 0.97 | |
| 7_P | 12_I | 1.139 | 0.97 | |
| 8_R | 71_Q | 1.133 | 0.97 | |
| 13_I | 41_L | 1.116 | 0.96 | |
| 47_A | 75_S | 1.097 | 0.96 | |
| 51_E | 55_K | 1.093 | 0.96 | |
| 74_W | 78_E | 1.088 | 0.96 | |
| 53_A | 65_Q | 1.078 | 0.95 | |
| 63_S | 66_M | 1.068 | 0.95 | |
| 65_Q | 69_N | 1.063 | 0.95 | |
| 4_A | 7_P | 1.05 | 0.94 | |
| 37_T | 46_A | 1.049 | 0.94 | |
| 6_H | 78_E | 1.033 | 0.94 | |
| 12_I | 70_L | 1.007 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2ictA | 1 | 1 | 99.4 | 0.502 | Contact Map | 0.586 |
| 3cecA | 1 | 0.9787 | 99.3 | 0.526 | Contact Map | 0.739 |
| 3trbA | 2 | 1 | 99.3 | 0.531 | Contact Map | 0.805 |
| 2ebyA | 2 | 1 | 99.2 | 0.548 | Contact Map | 0.797 |
| 2a6cA | 2 | 0.766 | 98.7 | 0.639 | Contact Map | 0.538 |
| 3g7dA | 1 | 1 | 98.7 | 0.64 | Contact Map | 0.416 |
| 3qq6A | 2 | 0.7979 | 98.6 | 0.647 | Contact Map | 0.735 |
| 3fmyA | 1 | 0.7447 | 98.6 | 0.65 | Contact Map | 0.435 |
| 3g5gA | 14 | 0.8404 | 98.5 | 0.656 | Contact Map | 0.751 |
| 3o9xA | 2 | 0.7447 | 98.5 | 0.657 | Contact Map | 0.434 |
Sequence Conservation (Image Generated using WebLogo v3)