| UniProt: | P0A9T6 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13245 | ||
| Length: | 113 (98) | ||
| Sequences: | 760 | ||
| Seq/Len: | 7.76 |
| YBAQ
Paralog alert: 0.53 [within 20: 0.02] - ratio of genomes with paralogs Cluster includes: YBAQ YDDM |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 72_N | 76_A | 2.837 | 1.00 | |
| 40_S | 55_M | 2.661 | 1.00 | |
| 43_A | 49_R | 2.367 | 1.00 | |
| 28_N | 32_E | 2.192 | 1.00 | |
| 29_E | 33_L | 2.162 | 1.00 | |
| 27_I | 42_S | 2.088 | 1.00 | |
| 33_L | 62_V | 2.007 | 1.00 | |
| 17_Y | 21_E | 1.997 | 1.00 | |
| 60_A | 67_V | 1.976 | 1.00 | |
| 28_N | 38_R | 1.84 | 1.00 | |
| 60_A | 66_T | 1.788 | 1.00 | |
| 80_W | 84_N | 1.761 | 1.00 | |
| 62_V | 98_V | 1.683 | 1.00 | |
| 39_N | 42_S | 1.672 | 1.00 | |
| 39_N | 43_A | 1.585 | 1.00 | |
| 88_T | 92_L | 1.557 | 1.00 | |
| 19_Y | 22_P | 1.544 | 1.00 | |
| 42_S | 46_N | 1.518 | 1.00 | |
| 56_A | 67_V | 1.461 | 0.99 | |
| 6_R | 80_W | 1.435 | 0.99 | |
| 60_A | 65_T | 1.415 | 0.99 | |
| 36_V | 55_M | 1.376 | 0.99 | |
| 27_I | 39_N | 1.363 | 0.99 | |
| 8_P | 81_E | 1.326 | 0.98 | |
| 16_L | 21_E | 1.318 | 0.98 | |
| 43_A | 48_N | 1.313 | 0.98 | |
| 57_F | 82_V | 1.307 | 0.98 | |
| 65_T | 69_F | 1.267 | 0.98 | |
| 50_K | 78_D | 1.264 | 0.98 | |
| 38_R | 42_S | 1.237 | 0.97 | |
| 61_K | 97_T | 1.226 | 0.97 | |
| 30_L | 59_L | 1.196 | 0.96 | |
| 9_T | 14_I | 1.188 | 0.96 | |
| 37_H | 40_S | 1.146 | 0.95 | |
| 56_A | 68_D | 1.143 | 0.95 | |
| 44_L | 55_M | 1.115 | 0.94 | |
| 13_D | 17_Y | 1.11 | 0.94 | |
| 27_I | 41_V | 1.105 | 0.94 | |
| 36_V | 40_S | 1.103 | 0.94 | |
| 68_D | 83_E | 1.1 | 0.94 | |
| 20_L | 25_L | 1.096 | 0.93 | |
| 10_T | 47_N | 1.067 | 0.92 | |
| 25_L | 30_L | 1.065 | 0.92 | |
| 10_T | 77_V | 1.055 | 0.92 | |
| 6_R | 9_T | 1.054 | 0.92 | |
| 77_V | 81_E | 1.039 | 0.91 | |
| 16_L | 45_I | 1.033 | 0.91 | |
| 67_V | 83_E | 1.027 | 0.90 | |
| 40_S | 54_E | 1.005 | 0.89 | |
| 62_V | 95_I | 1.004 | 0.89 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2ebyA | 2 | 1 | 99.6 | 0.58 | Contact Map | 0.792 |
| 3trbA | 2 | 0.885 | 99.5 | 0.607 | Contact Map | 0.746 |
| 3cecA | 1 | 0.8496 | 99.5 | 0.622 | Contact Map | 0.681 |
| 2ictA | 1 | 0.8319 | 99.4 | 0.643 | Contact Map | 0.52 |
| 2b5aA | 4 | 0.6814 | 98.7 | 0.733 | Contact Map | 0.82 |
| 3fmyA | 1 | 0.6372 | 98.7 | 0.735 | Contact Map | 0.451 |
| 2a6cA | 2 | 0.6549 | 98.6 | 0.741 | Contact Map | 0.541 |
| 3g7dA | 1 | 0.9912 | 98.6 | 0.743 | Contact Map | 0.481 |
| 4f8dA | 2 | 0.7168 | 98.6 | 0.745 | Contact Map | 0.56 |
| 3o9xA | 2 | 0.6372 | 98.5 | 0.745 | Contact Map | 0.443 |
Sequence Conservation (Image Generated using WebLogo v3)