| UniProt: | P42912 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12772 | ||
| Length: | 251 (232) | ||
| Sequences: | 2369 | ||
| Seq/Len: | 10.21 |
| AGAI
Paralog alert: 0.34 [within 20: 0.02] - ratio of genomes with paralogs Cluster includes: AGAI NAGB YIEK |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 101_T | 105_Q | 3.23 | 1.00 | |
| 130_E | 133_R | 2.764 | 1.00 | |
| 65_Y | 68_E | 2.554 | 1.00 | |
| 136_N | 140_R | 2.526 | 1.00 | |
| 104_Q | 109_Q | 2.515 | 1.00 | |
| 121_F | 196_I | 2.338 | 1.00 | |
| 153_K | 217_G | 2.328 | 1.00 | |
| 222_T | 249_I | 2.257 | 1.00 | |
| 208_E | 244_N | 2.25 | 1.00 | |
| 105_Q | 109_Q | 2.149 | 1.00 | |
| 76_D | 112_G | 2.101 | 1.00 | |
| 119_I | 137_L | 2.096 | 1.00 | |
| 27_N | 30_A | 2.001 | 1.00 | |
| 39_L | 62_T | 1.993 | 1.00 | |
| 93_L | 100_E | 1.962 | 1.00 | |
| 132_E | 136_N | 1.927 | 1.00 | |
| 220_D | 224_R | 1.921 | 1.00 | |
| 58_T | 212_L | 1.852 | 1.00 | |
| 145_D | 207_R | 1.837 | 1.00 | |
| 42_V | 208_E | 1.803 | 1.00 | |
| 31_L | 214_T | 1.802 | 1.00 | |
| 33_E | 65_Y | 1.773 | 1.00 | |
| 82_F | 108_V | 1.77 | 1.00 | |
| 28_Y | 32_S | 1.742 | 1.00 | |
| 81_T | 119_I | 1.731 | 1.00 | |
| 223_D | 227_T | 1.708 | 1.00 | |
| 100_E | 104_Q | 1.675 | 1.00 | |
| 54_A | 85_L | 1.673 | 1.00 | |
| 177_A | 181_Q | 1.665 | 1.00 | |
| 129_T | 133_R | 1.656 | 1.00 | |
| 204_L | 238_F | 1.616 | 1.00 | |
| 32_S | 61_L | 1.616 | 1.00 | |
| 147_C | 206_A | 1.61 | 1.00 | |
| 37_E | 69_K | 1.6 | 1.00 | |
| 42_V | 49_A | 1.595 | 1.00 | |
| 151_L | 213_V | 1.592 | 1.00 | |
| 40_L | 69_K | 1.588 | 1.00 | |
| 169_A | 205_N | 1.583 | 1.00 | |
| 213_V | 222_T | 1.578 | 1.00 | |
| 25_V | 34_R | 1.577 | 1.00 | |
| 38_Y | 248_L | 1.573 | 1.00 | |
| 100_E | 120_S | 1.573 | 1.00 | |
| 78_S | 112_G | 1.564 | 1.00 | |
| 39_L | 51_I | 1.529 | 1.00 | |
| 35_A | 62_T | 1.511 | 1.00 | |
| 81_T | 117_Q | 1.502 | 1.00 | |
| 164_E | 171_H | 1.488 | 1.00 | |
| 84_K | 103_L | 1.482 | 1.00 | |
| 60_L | 106_H | 1.482 | 1.00 | |
| 62_T | 148_V | 1.442 | 1.00 | |
| 133_R | 137_L | 1.433 | 1.00 | |
| 83_V | 141_K | 1.413 | 1.00 | |
| 187_T | 190_R | 1.412 | 1.00 | |
| 155_G | 234_I | 1.41 | 1.00 | |
| 158_G | 203_I | 1.396 | 0.99 | |
| 174_Q | 194_R | 1.393 | 0.99 | |
| 151_L | 225_F | 1.383 | 0.99 | |
| 40_L | 75_V | 1.336 | 0.99 | |
| 209_V | 245_F | 1.335 | 0.99 | |
| 138_I | 144_L | 1.331 | 0.99 | |
| 96_P | 101_T | 1.33 | 0.99 | |
| 188_A | 191_P | 1.32 | 0.99 | |
| 25_V | 31_L | 1.316 | 0.99 | |
| 198_L | 202_D | 1.314 | 0.99 | |
| 28_Y | 61_L | 1.303 | 0.99 | |
| 113_L | 117_Q | 1.294 | 0.99 | |
| 52_C | 147_C | 1.287 | 0.99 | |
| 37_E | 41_A | 1.269 | 0.99 | |
| 89_V | 127_N | 1.266 | 0.99 | |
| 225_F | 247_C | 1.256 | 0.99 | |
| 43_I | 80_L | 1.256 | 0.99 | |
| 108_V | 118_L | 1.251 | 0.99 | |
| 38_Y | 208_E | 1.226 | 0.98 | |
| 64_H | 106_H | 1.22 | 0.98 | |
| 25_V | 248_L | 1.217 | 0.98 | |
| 60_L | 64_H | 1.207 | 0.98 | |
| 187_T | 192_V | 1.207 | 0.98 | |
| 43_I | 49_A | 1.204 | 0.98 | |
| 133_R | 136_N | 1.204 | 0.98 | |
| 48_N | 81_T | 1.2 | 0.98 | |
| 68_E | 72_Q | 1.198 | 0.98 | |
| 104_Q | 115_E | 1.196 | 0.98 | |
| 70_I | 74_Q | 1.188 | 0.98 | |
| 94_T | 101_T | 1.186 | 0.98 | |
| 44_R | 74_Q | 1.181 | 0.98 | |
| 224_R | 234_I | 1.174 | 0.98 | |
| 127_N | 172_I | 1.166 | 0.97 | |
| 31_L | 248_L | 1.157 | 0.97 | |
| 122_R | 130_E | 1.147 | 0.97 | |
| 222_T | 247_C | 1.143 | 0.97 | |
| 222_T | 225_F | 1.141 | 0.97 | |
| 81_T | 114_R | 1.139 | 0.97 | |
| 57_A | 102_F | 1.138 | 0.97 | |
| 98_T | 101_T | 1.132 | 0.97 | |
| 35_A | 212_L | 1.131 | 0.97 | |
| 62_T | 212_L | 1.13 | 0.97 | |
| 52_C | 85_L | 1.129 | 0.97 | |
| 38_Y | 210_L | 1.119 | 0.96 | |
| 188_A | 192_V | 1.105 | 0.96 | |
| 115_E | 118_L | 1.104 | 0.96 | |
| 35_A | 248_L | 1.103 | 0.96 | |
| 23_Q | 248_L | 1.097 | 0.96 | |
| 28_Y | 214_T | 1.096 | 0.96 | |
| 91_L | 94_T | 1.095 | 0.96 | |
| 139_A | 205_N | 1.089 | 0.96 | |
| 40_L | 44_R | 1.089 | 0.96 | |
| 114_R | 117_Q | 1.083 | 0.96 | |
| 58_T | 214_T | 1.078 | 0.95 | |
| 50_V | 83_V | 1.075 | 0.95 | |
| 49_A | 80_L | 1.074 | 0.95 | |
| 39_L | 146_L | 1.063 | 0.95 | |
| 135_T | 202_D | 1.06 | 0.95 | |
| 65_Y | 69_K | 1.058 | 0.95 | |
| 35_A | 210_L | 1.058 | 0.95 | |
| 102_F | 106_H | 1.057 | 0.95 | |
| 50_V | 81_T | 1.057 | 0.95 | |
| 144_L | 147_C | 1.038 | 0.94 | |
| 136_N | 139_A | 1.033 | 0.94 | |
| 76_D | 79_Q | 1.031 | 0.94 | |
| 128_E | 132_E | 1.031 | 0.94 | |
| 104_Q | 118_L | 1.028 | 0.94 | |
| 135_T | 139_A | 1.016 | 0.93 | |
| 146_L | 210_L | 1.013 | 0.93 | |
| 59_P | 63_Y | 1.006 | 0.93 | |
| 67_V | 110_P | 1 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3oc6A | 1 | 0.9004 | 100 | 0.174 | Contact Map | 0.709 |
| 3tx2A | 1 | 0.9004 | 100 | 0.177 | Contact Map | 0.695 |
| 3icoA | 4 | 0.9562 | 100 | 0.185 | Contact Map | 0.739 |
| 3eb9A | 2 | 0.8884 | 100 | 0.198 | Contact Map | 0.737 |
| 1vl1A | 1 | 0.9044 | 100 | 0.2 | Contact Map | 0.712 |
| 3lwdA | 1 | 0.8645 | 100 | 0.222 | Contact Map | 0.573 |
| 3e15A | 4 | 0.9841 | 100 | 0.229 | Contact Map | 0.705 |
| 3cssA | 1 | 0.8924 | 100 | 0.241 | Contact Map | 0.63 |
| 3lhiA | 1 | 0.8884 | 100 | 0.253 | Contact Map | 0.556 |
| 1y89A | 2 | 0.8805 | 100 | 0.267 | Contact Map | 0.725 |
Sequence Conservation (Image Generated using WebLogo v3)