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OPENSEQ.org
YGJQ - Uncharacterized protein YgjQ
UniProt: P42598 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12728
Length: 230 (208)
Sequences: 329
Seq/Len: 1.58
YGJQ
Paralog alert: 0.50 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SANA YGJQ
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
73_F 112_A 3.058 1.00
104_D 107_S 2.718 1.00
130_F 211_Y 2.657 1.00
98_N 127_Y 2.638 1.00
61_G 151_I 2.624 1.00
62_L 148_I 2.612 1.00
64_L 150_I 2.49 1.00
94_V 113_L 2.253 0.99
61_G 89_V 2.205 0.99
89_V 151_I 1.963 0.98
94_V 123_I 1.941 0.98
62_L 135_S 1.939 0.98
93_L 139_A 1.932 0.98
47_L 165_K 1.854 0.97
161_I 165_K 1.78 0.96
131_S 134_D 1.735 0.95
164_A 171_A 1.708 0.94
91_W 124_F 1.571 0.90
130_F 213_G 1.554 0.90
98_N 143_F 1.515 0.88
58_R 149_T 1.487 0.87
99_G 130_F 1.441 0.84
128_A 143_F 1.404 0.82
79_T 152_S 1.377 0.80
143_F 213_G 1.363 0.79
43_A 165_K 1.36 0.79
98_N 104_D 1.34 0.78
81_A 85_H 1.33 0.77
73_F 179_L 1.329 0.77
157_N 173_G 1.309 0.75
161_I 171_A 1.299 0.75
99_G 211_Y 1.294 0.74
58_R 170_D 1.287 0.74
74_T 78_D 1.287 0.74
209_P 212_L 1.281 0.73
127_Y 143_F 1.28 0.73
81_A 118_V 1.275 0.73
136_V 164_A 1.274 0.72
48_T 86_A 1.26 0.71
157_N 175_N 1.248 0.70
73_F 157_N 1.246 0.70
130_F 212_L 1.242 0.70
81_A 142_V 1.241 0.70
161_I 175_N 1.226 0.68
47_L 161_I 1.217 0.67
133_L 167_Y 1.21 0.67
155_F 163_L 1.204 0.66
69_G 77_I 1.201 0.66
84_Y 87_G 1.197 0.66
148_I 169_I 1.19 0.65
78_D 112_A 1.188 0.65
128_A 213_G 1.188 0.65
66_A 70_N 1.185 0.64
136_V 150_I 1.182 0.64
131_S 201_D 1.175 0.63
88_K 155_F 1.167 0.63
93_L 218_I 1.157 0.62
72_Y 75_R 1.157 0.62
58_R 172_I 1.155 0.62
95_S 135_S 1.146 0.61
135_S 148_I 1.136 0.60
171_A 195_R 1.135 0.60
93_L 212_L 1.131 0.59
72_Y 152_S 1.127 0.59
63_L 198_A 1.116 0.58
66_A 112_A 1.115 0.57
134_D 155_F 1.111 0.57
49_W 56_P 1.11 0.57
213_G 216_V 1.108 0.57
78_D 82_A 1.107 0.57
109_M 118_V 1.106 0.57
70_N 73_F 1.104 0.56
98_N 128_A 1.101 0.56
23_C 34_L 1.099 0.56
48_T 163_L 1.099 0.56
56_P 117_G 1.094 0.55
152_S 157_N 1.091 0.55
84_Y 110_Q 1.089 0.55
115_A 210_K 1.089 0.55
73_F 108_G 1.078 0.54
98_N 103_Y 1.069 0.53
64_L 148_I 1.058 0.52
103_Y 106_A 1.054 0.51
146_N 151_I 1.043 0.50
150_I 195_R 1.043 0.50
137_V 141_K 1.042 0.50
107_S 127_Y 1.041 0.50
22_A 27_L 1.038 0.49
112_A 133_L 1.033 0.49
51_D 54_A 1.033 0.49
122_V 149_T 1.028 0.48
62_L 149_T 1.024 0.48
84_Y 163_L 1.014 0.47
149_T 172_I 1.013 0.47
104_D 202_A 1.012 0.47
137_V 167_Y 1.005 0.46
130_F 142_V 1.003 0.46
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
3ca8A20.873999.90.739Contact Map0.379
2yp6A40.669652.80.956Contact Map0.134
2hqsH40.452235.20.96Contact Map0.322
1lbqA20.924.60.963Contact Map0.263
2xmoA20.923.10.964Contact Map0.222
4g4xA10.443521.90.964Contact Map0.347
1r1mA10.539121.90.964Contact Map0.349
4aw9A10.565220.50.965Contact Map0.005
3td3A80.478318.80.965Contact Map0.304
4fguA20.552217.90.965Contact Map0.02
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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