| UniProt: | P0AGF2 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13083 | ||
| Length: | 147 (136) | ||
| Sequences: | 923 | ||
| Seq/Len: | 6.79 |
| YGDK
Paralog alert: 0.43 [within 20: 0.00] - ratio of genomes with paralogs Cluster includes: SUFE YGDK |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 105_A | 109_A | 3.441 | 1.00 | |
| 102_K | 106_E | 3.12 | 1.00 | |
| 82_D | 89_R | 2.921 | 1.00 | |
| 117_D | 122_R | 2.456 | 1.00 | |
| 103_T | 106_E | 2.353 | 1.00 | |
| 111_S | 114_A | 1.991 | 1.00 | |
| 81_G | 92_L | 1.948 | 1.00 | |
| 78_H | 100_E | 1.862 | 1.00 | |
| 37_L | 94_V | 1.845 | 1.00 | |
| 49_D | 52_K | 1.789 | 1.00 | |
| 38_I | 41_G | 1.768 | 1.00 | |
| 21_R | 118_E | 1.74 | 1.00 | |
| 20_L | 97_T | 1.732 | 1.00 | |
| 51_L | 80_F | 1.731 | 1.00 | |
| 63_N | 85_G | 1.72 | 1.00 | |
| 25_A | 118_E | 1.611 | 1.00 | |
| 36_Q | 39_M | 1.598 | 1.00 | |
| 47_L | 52_K | 1.574 | 1.00 | |
| 53_A | 56_K | 1.569 | 1.00 | |
| 139_A | 143_A | 1.54 | 0.99 | |
| 52_K | 82_D | 1.515 | 0.99 | |
| 78_H | 101_G | 1.486 | 0.99 | |
| 62_E | 128_S | 1.47 | 0.99 | |
| 88_V | 135_A | 1.451 | 0.99 | |
| 57_E | 64_R | 1.427 | 0.99 | |
| 99_V | 112_P | 1.413 | 0.99 | |
| 30_W | 124_Q | 1.413 | 0.99 | |
| 79_F | 107_L | 1.41 | 0.99 | |
| 87_I | 124_Q | 1.406 | 0.99 | |
| 48_P | 51_L | 1.341 | 0.98 | |
| 23_T | 36_Q | 1.336 | 0.98 | |
| 88_V | 91_L | 1.319 | 0.98 | |
| 98_A | 115_L | 1.312 | 0.98 | |
| 60_G | 83_S | 1.292 | 0.97 | |
| 17_A | 58_I | 1.289 | 0.97 | |
| 23_T | 97_T | 1.276 | 0.97 | |
| 108_Q | 145_K | 1.254 | 0.97 | |
| 138_E | 142_A | 1.176 | 0.95 | |
| 47_L | 80_F | 1.172 | 0.95 | |
| 35_R | 86_R | 1.171 | 0.95 | |
| 63_N | 84_E | 1.169 | 0.95 | |
| 36_Q | 40_L | 1.152 | 0.94 | |
| 99_V | 140_I | 1.139 | 0.94 | |
| 110_Q | 115_L | 1.131 | 0.93 | |
| 11_F | 15_V | 1.127 | 0.93 | |
| 40_L | 97_T | 1.123 | 0.93 | |
| 70_T | 80_F | 1.095 | 0.92 | |
| 35_R | 39_M | 1.089 | 0.91 | |
| 30_W | 34_Y | 1.084 | 0.91 | |
| 35_R | 62_E | 1.078 | 0.91 | |
| 32_D | 35_R | 1.078 | 0.91 | |
| 65_V | 93_A | 1.078 | 0.91 | |
| 104_A | 108_Q | 1.073 | 0.91 | |
| 69_Y | 79_F | 1.065 | 0.90 | |
| 20_L | 94_V | 1.063 | 0.90 | |
| 102_K | 110_Q | 1.039 | 0.89 | |
| 34_Y | 87_I | 1.037 | 0.89 | |
| 54_Q | 59_A | 1.024 | 0.88 | |
| 76_K | 103_T | 1.022 | 0.88 | |
| 12_G | 15_V | 1.021 | 0.88 | |
| 62_E | 86_R | 1.017 | 0.87 | |
| 69_Y | 77_M | 1.01 | 0.87 | |
| 70_T | 74_N | 1 | 0.86 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 4lw4C | 2 | 1 | 100 | 0.036 | Contact Map | 0.645 |
| 1ni7A | 1 | 1 | 100 | 0.038 | Contact Map | 0.489 |
| 3g0mA | 1 | 0.9524 | 100 | 0.08 | Contact Map | 0.658 |
| 1wloA | 1 | 0.8912 | 100 | 0.144 | Contact Map | 0.279 |
| 4eb5C | 2 | 0.7483 | 58.7 | 0.922 | Contact Map | 0.375 |
| 3lvlA | 1 | 0.7619 | 44.5 | 0.929 | Contact Map | 0.442 |
| 2z7eA | 3 | 0.8027 | 38.6 | 0.931 | Contact Map | 0.495 |
| 2qq4A | 10 | 0.7891 | 38.5 | 0.931 | Contact Map | 0.48 |
| 1su0B | 1 | 0.8095 | 12.3 | 0.946 | Contact Map | 0.341 |
| 1xjsA | 1 | 0.8163 | 11.7 | 0.946 | Contact Map | 0.367 |
Sequence Conservation (Image Generated using WebLogo v3)