| UniProt: | P0AGD3 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10954 | ||
| Length: | 193 (193) | ||
| Sequences: | 2291 | ||
| Seq/Len: | 11.87 |
| SODF
Paralog alert: 0.40 [within 20: 0.02] - ratio of genomes with paralogs Cluster includes: SODF SODM |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 33_Q | 37_T | 4.503 | 1.00 | |
| 170_A | 173_G | 2.946 | 1.00 | |
| 106_D | 109_A | 2.908 | 1.00 | |
| 93_V | 188_A | 2.653 | 1.00 | |
| 186_F | 189_K | 2.648 | 1.00 | |
| 38_N | 41_N | 2.453 | 1.00 | |
| 129_N | 135_A | 2.426 | 1.00 | |
| 94_A | 98_A | 2.392 | 1.00 | |
| 21_A | 25_E | 2.296 | 1.00 | |
| 156_V | 175_L | 2.274 | 1.00 | |
| 186_F | 190_N | 2.274 | 1.00 | |
| 95_E | 98_A | 2.266 | 1.00 | |
| 22_E | 168_R | 2.214 | 1.00 | |
| 115_A | 124_T | 2.168 | 1.00 | |
| 52_S | 55_E | 2.087 | 1.00 | |
| 109_A | 113_D | 2.07 | 1.00 | |
| 19_I | 77_Y | 2.009 | 1.00 | |
| 18_H | 180_A | 1.996 | 1.00 | |
| 96_A | 191_L | 1.982 | 1.00 | |
| 106_D | 110_Q | 1.977 | 1.00 | |
| 173_G | 176_E | 1.961 | 1.00 | |
| 115_A | 156_V | 1.922 | 1.00 | |
| 20_S | 166_D | 1.889 | 1.00 | |
| 41_N | 44_K | 1.874 | 1.00 | |
| 37_T | 41_N | 1.86 | 1.00 | |
| 36_V | 71_V | 1.844 | 1.00 | |
| 12_K | 29_G | 1.844 | 1.00 | |
| 81_L | 178_F | 1.82 | 1.00 | |
| 113_D | 117_K | 1.793 | 1.00 | |
| 100_S | 133_K | 1.77 | 1.00 | |
| 154_L | 187_V | 1.768 | 1.00 | |
| 79_N | 186_F | 1.765 | 1.00 | |
| 118_N | 138_S | 1.744 | 1.00 | |
| 82_A | 85_A | 1.688 | 1.00 | |
| 96_A | 99_A | 1.682 | 1.00 | |
| 127_V | 137_V | 1.665 | 1.00 | |
| 116_I | 175_L | 1.642 | 1.00 | |
| 188_A | 192_A | 1.604 | 1.00 | |
| 112_T | 176_E | 1.599 | 1.00 | |
| 115_A | 175_L | 1.539 | 1.00 | |
| 112_T | 116_I | 1.516 | 1.00 | |
| 13_D | 21_A | 1.508 | 1.00 | |
| 4_E | 7_A | 1.493 | 1.00 | |
| 185_E | 188_A | 1.493 | 1.00 | |
| 88_E | 105_A | 1.49 | 1.00 | |
| 107_F | 111_F | 1.489 | 1.00 | |
| 110_Q | 113_D | 1.486 | 1.00 | |
| 71_V | 75_T | 1.482 | 1.00 | |
| 165_I | 168_R | 1.473 | 1.00 | |
| 80_C | 187_V | 1.424 | 1.00 | |
| 92_K | 192_A | 1.421 | 1.00 | |
| 45_G | 49_E | 1.421 | 1.00 | |
| 32_H | 78_W | 1.401 | 0.99 | |
| 6_P | 75_T | 1.399 | 0.99 | |
| 111_F | 156_V | 1.391 | 0.99 | |
| 39_L | 68_A | 1.391 | 0.99 | |
| 156_V | 178_F | 1.38 | 0.99 | |
| 105_A | 108_K | 1.373 | 0.99 | |
| 11_A | 14_A | 1.327 | 0.99 | |
| 129_N | 150_A | 1.31 | 0.99 | |
| 112_T | 175_L | 1.301 | 0.99 | |
| 5_L | 28_Y | 1.296 | 0.99 | |
| 125_W | 139_T | 1.278 | 0.99 | |
| 24_I | 77_Y | 1.275 | 0.99 | |
| 22_E | 25_E | 1.264 | 0.99 | |
| 25_E | 29_G | 1.257 | 0.99 | |
| 116_I | 172_P | 1.244 | 0.98 | |
| 104_F | 107_F | 1.238 | 0.98 | |
| 118_N | 124_T | 1.23 | 0.98 | |
| 95_E | 99_A | 1.22 | 0.98 | |
| 127_V | 135_A | 1.204 | 0.98 | |
| 96_A | 100_S | 1.203 | 0.98 | |
| 92_K | 95_E | 1.203 | 0.98 | |
| 38_N | 67_N | 1.183 | 0.98 | |
| 179_W | 182_V | 1.177 | 0.98 | |
| 167_Y | 177_H | 1.167 | 0.97 | |
| 51_K | 59_S | 1.165 | 0.97 | |
| 158_V | 171_R | 1.163 | 0.97 | |
| 3_F | 39_L | 1.163 | 0.97 | |
| 43_I | 46_T | 1.159 | 0.97 | |
| 39_L | 64_V | 1.152 | 0.97 | |
| 128_K | 191_L | 1.143 | 0.97 | |
| 90_T | 188_A | 1.131 | 0.97 | |
| 153_L | 187_V | 1.131 | 0.97 | |
| 79_N | 190_N | 1.125 | 0.97 | |
| 72_W | 144_T | 1.121 | 0.97 | |
| 92_K | 188_A | 1.115 | 0.96 | |
| 178_F | 182_V | 1.112 | 0.96 | |
| 9_P | 79_N | 1.108 | 0.96 | |
| 163_Y | 171_R | 1.105 | 0.96 | |
| 12_K | 25_E | 1.101 | 0.96 | |
| 69_A | 142_A | 1.09 | 0.96 | |
| 182_V | 187_V | 1.085 | 0.96 | |
| 135_A | 150_A | 1.084 | 0.96 | |
| 3_F | 43_I | 1.083 | 0.96 | |
| 30_K | 170_A | 1.081 | 0.95 | |
| 114_A | 136_I | 1.077 | 0.95 | |
| 109_A | 176_E | 1.073 | 0.95 | |
| 111_F | 178_F | 1.072 | 0.95 | |
| 124_T | 138_S | 1.065 | 0.95 | |
| 107_F | 136_I | 1.062 | 0.95 | |
| 101_F | 110_Q | 1.056 | 0.95 | |
| 114_A | 124_T | 1.054 | 0.95 | |
| 12_K | 28_Y | 1.043 | 0.94 | |
| 82_A | 86_G | 1.031 | 0.94 | |
| 76_F | 186_F | 1.03 | 0.94 | |
| 65_F | 143_G | 1.027 | 0.94 | |
| 112_T | 179_W | 1.022 | 0.93 | |
| 108_K | 180_A | 1.021 | 0.93 | |
| 44_K | 49_E | 1.017 | 0.93 | |
| 93_V | 187_V | 1.012 | 0.93 | |
| 34_T | 38_N | 1.008 | 0.93 | |
| 51_K | 55_E | 1.005 | 0.93 | |
| 88_E | 94_A | 1.003 | 0.93 | |
| 154_L | 182_V | 1 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3tqjA | 2 | 1 | 100 | -0.038 | Contact Map | 0.804 |
| 1gv3A | 2 | 1 | 100 | -0.038 | Contact Map | 0.787 |
| 1mngA | 2 | 1 | 100 | -0.038 | Contact Map | 0.78 |
| 4k2wA | 2 | 1 | 100 | -0.037 | Contact Map | 0.769 |
| 1uerA | 4 | 0.9896 | 100 | -0.037 | Contact Map | 0.83 |
| 2awpA | 2 | 1 | 100 | -0.036 | Contact Map | 0.775 |
| 2cw2A | 2 | 0.9948 | 100 | -0.035 | Contact Map | 0.781 |
| 2rcvA | 8 | 0.9948 | 100 | -0.034 | Contact Map | 0.804 |
| 2nybA | 4 | 0.9948 | 100 | -0.033 | Contact Map | 0.805 |
| 1dt0A | 3 | 0.9948 | 100 | -0.031 | Contact Map | 0.816 |
Sequence Conservation (Image Generated using WebLogo v3)